Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00518 ATGAAGAAGGGTGAGAAGGTCCTTCTGACGGTGAAGCCACAATATGGGTTTGGGGAGAAAGGTAAGCCAGCCTCTGGTGGTGAGGGTGCTGTTCCACCGAATGCAACTCTTCAGATCACTCTGGAGTTGTTATCATGGAAAACTGTCTCAGAAGTTACAAATGACAGAAAGGTTATCAAGAAAATTCTCAAGGAAGGAGAAGGGTATGAGCGTCCAAGTGATGGATCTGTCGTCAAAATAAAGGTGATCGGGAAGCTGCACGATGGTACAATATTTATGAAGAAGGGCCATGACGATGGGGAGGAGCTCTATGAATTTAAGACCGATGACGAGCAAGTAATTGATGGGCTTGATAGAGCTGTAATGACAATGAAAAAGGGGGAGGTGGCATTGTTGACTATTGCTCCCGAGTATGCATATGGTTCATCAGAGTTGTCACAGGAGTTAGCCATTGTTCCTCCCAACTCAACCGTGTTCTTTGAGGTTGAACTCGTCTCTTTTGTCAAGGAAAAGGAATCATGGGACATGAATACGCAGGAGAAGATTGAAGCTGCTGGTAGGAAGAAGGAAGAAGGAAATGTTTTGTTTAAGGCTGGAAAATATGTCAGAGCTGCCAAGAGATACGAAAAAGCTGTGAAGTATATCGAGTATGATTCTACTTTCAGCGAGGAGGAAAAAAAGCAGGCCAAAGCACTGAAGGTGGCTTGCAGTCTGAACGATGCTGCTTGCAAGTTGAAGCTGAAATTGTACAAGGAGGCAGAAAAATTGTGTACCAAGGTGTTAGAAGCTGAAAGTGGGAATGTGAAGGCCCTCTACAGAAGGGCACAGGCTTACGTTCAAATTGCAGACTTAGACTTGGCAGAGGTTGATATTAAAAAGGCCTTGGAGATTGACCCGGACAATAGGGAAGTTAAACTAGAGTACAGAACTTTGAAGGAGAAGATGAAGGAATTGAACAAGAAGGAAGCTAAATTTTATGGCAACATGTTTGCCAAGATGAACAAGTTAGAGGCCCTTGATTCTAAAAAACAGAAGCAAGCCAAGGCAACAATCATCGATAGCAGTGCATGA 1071 43.7 MKKGEKVLLTVKPQYGFGEKGKPASGGEGAVPPNATLQITLELLSWKTVSEVTNDRKVIKKILKEGEGYERPSDGSVVKIKVIGKLHDGTIFMKKGHDDGEELYEFKTDDEQVIDGLDRAVMTMKKGEVALLTIAPEYAYGSSELSQELAIVPPNSTVFFEVELVSFVKEKESWDMNTQEKIEAAGRKKEEGNVLFKAGKYVRAAKRYEKAVKYIEYDSTFSEEEKKQAKALKVACSLNDAACKLKLKLYKEAEKLCTKVLEAESGNVKALYRRAQAYVQIADLDLAEVDIKKALEIDPDNREVKLEYRTLKEKMKELNKKEAKFYGNMFAKMNKLEALDSKKQKQAKATIIDSSA 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 38814020 38816836 + Bda007393.1 Bda10g00518 14406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00518 356 ProSiteProfiles TPR repeat profile. 268 301 IPR019734 GO:0005515
Bda10g00518 356 SMART tpr_5 185 218 IPR019734 GO:0005515
Bda10g00518 356 SMART tpr_5 268 301 IPR019734 GO:0005515
Bda10g00518 356 SMART tpr_5 234 267 IPR019734 GO:0005515
Bda10g00518 356 Gene3D Tetratricopeptide repeat domain 171 328 IPR011990 GO:0005515
Bda10g00518 356 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 55 167 - -
Bda10g00518 356 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 54 - -
Bda10g00518 356 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 168 338 - -
Bda10g00518 356 SUPERFAMILY TPR-like 173 334 IPR011990 GO:0005515
Bda10g00518 356 Gene3D - 1 47 IPR046357 GO:0003755
Bda10g00518 356 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 69 165 IPR001179 GO:0003755
Bda10g00518 356 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 1 44 IPR001179 GO:0003755
Bda10g00518 356 SUPERFAMILY FKBP-like 50 185 - -
Bda10g00518 356 SUPERFAMILY FKBP-like 1 50 - -
Bda10g00518 356 Coils Coil 355 356 - -
Bda10g00518 356 Gene3D - 48 170 IPR046357 GO:0003755
Bda10g00518 356 Pfam Tetratricopeptide repeat 268 301 IPR001440 GO:0005515
Bda10g00518 356 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 75 168 IPR001179 GO:0003755
Bda10g00518 356 PANTHER PEPTIDYLPROLYL ISOMERASE 55 167 - -
Bda10g00518 356 PANTHER PEPTIDYLPROLYL ISOMERASE 1 54 - -
Bda10g00518 356 PANTHER PEPTIDYLPROLYL ISOMERASE 168 338 - -
Bda10g00518 356 Coils Coil 301 321 - -
Bda10g00518 356 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 1 47 IPR001179 GO:0003755
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00670 Bda-Chr2:47682640 Bda10g00518 Bda-Chr10:38814020 1.38E-11 dispersed
Bda03g00801 Bda-Chr3:6794021 Bda10g00518 Bda-Chr10:38814020 7.60E-06 dispersed
Bda10g00508 Bda-Chr10:38419765 Bda10g00518 Bda-Chr10:38814020 4.61E-06 dispersed
Bda10g00518 Bda-Chr10:38814020 Bda15g00028 Bda-Chr15:1686777 7.86E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00518 K09571 - rcu:8272763 579.326