Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00519 ATGTCTCGGACGCCTAACTATGAGTTCCAGGAATGGTGGAACGAGCAGCGAGAGAGAAATCATCAGGAGCTCCTCTCTGAGAATTCGGAAACTTCCACCGCCTGTTCCTTTCTCGCAGTCGACATTCCCGGCGGGGAATCTCCTCATGATCTTGCCATTGAGAAGGACCGGGGTAGGACACGTAGTGCGCGCCAGCTCTCATTTGTTTGTCTCCTGAAATTCCAGCAATTTGCCGCGTTTTTTACATCCATTACTGCCGGTTTCGTTTTCCTCATTCGCACTGCGAATCGTCGGATCGCGTCCCCCGATGCTCCTGCTGATTCGGCTTCCTCTCGTCTCTACCGGATTATTAAAGTGTTTTTGATTGTGGTGCTGTTGTTGTTGCTCTTCGAGCTCGTGGCTTACTTCAATGGATGGCATTTTAGTCCGCCTTCTGTTGGTTCCGCCGAGATGCTTGGACTGCTGGAATTTTTGTACGCCAATTGGCTAGATATTCGTGCGAACTACCTGGCCCCGCCGCTACAGAGCTTGACCAATGTGTGCATTGTCTTGTTTTTGATACAATCGGTGGATCGAATAGTTTTGATGGTTGGATGCTTTTGGATCAAATCCCGGAGAATGAAGCCTAAGTCGGCGGTGGAATATCCTTCCAGCGACGGGAATGTGAACATCGAGGATTATCCGTTCGTCCTGGTACAGATTCCCATGTGCAATGAGAGGGAGGTAGGATTCAGTACTTACCAGCTTCTATGGATTGGCACGCAGGTTTACCAACAATCTATTGCAGCCGTTTGTATCCAGGATTGGCCCAAGGAGAAAATGCTTGTACAGGTTTTGGATGATTCTGATGAACAAGATGTTCAGCTGCTTATTAAGGGAGAAGTGCAAAAATGGCAACAAAGGGGTGTTCGGATACTGTATAGACATCGTCTCCTACGCACTGGATACAAGGCTGGAAATCTCAAATCAGCTATGAGTTGTGATTATGTAAAAGATTATGAGTTTGTCGCCATCTTTGATGCAGATTTTCAACCAGGCCCCGACTTTTTAAAGAAAACCATACCACACTTTAAGGAAAATCATGATCTAGCATTGGTGCAGACAAGGTGGGCATTCGTAAACAAGGATGAGAACTTGCTCACGAGACTGCAGAACATTAATTTATCCTTCCATTTTGAGGTCGAACAACAAGTCAATGGCGTGTTTCTCAACTTTTTTGGTTTCAATGGAACTGCTGGTGTGTGGAGAATCGAAGCACTTGAGGAATGTGGTGGCTGGTTGGAAAGGACAACTGTTGAGGACATGGATATTGCAGTACGCGCACATCTTCATGGGTGGAAGTTCATATATTTGAATGATGTTAAGTGTCTTTGTGAACTTCCAGAGTCCTATGAGGCATACAAGAAACAGCAACATCGCTGGCATTCCGGTCCAATGCAGTTGTTTCGGTTGTGTTTCCTCGATGTACTGCGTTCAAAGGCAAGGAACTTTTATTTTATTATCTGCGCAAAAAAGGCCAACCTGATATGTCTTTTCTTCCTCCTCCGAAAGCTTATCCTCCCCTTTTATTCTTTCACACTTTTTTGCATCATTCTCCCATTGACCATGTTCCTTCCAGAAGCTCAAATACCTGCATGGGTTGTTTGCTATGTACCTGGAATCATGTCTATCTTAAATATTCTTCCAGCACCGAGATCATTTCCTTTTATAGTCCCTTACCTTCTGTTTGAGAACACCATGTCTGTAACCAAGTTCAATGCAATGATATCTGGATTGTTCCAATTTGGGAGTTCTTATGAATGGATCGTTACAAAGAAGTTGGGAAGATCATCGGAGACTGATTTAGTTGCCTTCGAAAAAGAGTTGGATCTGCAAACGGAAACTACTAGCCTTCTCCGATCATCCTCTGATTCAGGTCTTCAAGAGCTCAGTAGGATAGAGATATCTAAGAAAACTGGGAACTCCAGAAAAAATCGTCTGTACAGAAAGGAACTTGCTCTTGCATTTATTTTGTTGACCGCATCTGTGAGAAGCCTACTGTCTGCTCAAGGAATACACTTCTACTTTCTCCTATTTCAAGGGATCACATTTTTAGTCGTTGGTCTTGATTTGATAGGGGAGCAGGTTAGTTGA 2133 44.4 MSRTPNYEFQEWWNEQRERNHQELLSENSETSTACSFLAVDIPGGESPHDLAIEKDRGRTRSARQLSFVCLLKFQQFAAFFTSITAGFVFLIRTANRRIASPDAPADSASSRLYRIIKVFLIVVLLLLLFELVAYFNGWHFSPPSVGSAEMLGLLEFLYANWLDIRANYLAPPLQSLTNVCIVLFLIQSVDRIVLMVGCFWIKSRRMKPKSAVEYPSSDGNVNIEDYPFVLVQIPMCNEREVGFSTYQLLWIGTQVYQQSIAAVCIQDWPKEKMLVQVLDDSDEQDVQLLIKGEVQKWQQRGVRILYRHRLLRTGYKAGNLKSAMSCDYVKDYEFVAIFDADFQPGPDFLKKTIPHFKENHDLALVQTRWAFVNKDENLLTRLQNINLSFHFEVEQQVNGVFLNFFGFNGTAGVWRIEALEECGGWLERTTVEDMDIAVRAHLHGWKFIYLNDVKCLCELPESYEAYKKQQHRWHSGPMQLFRLCFLDVLRSKARNFYFIICAKKANLICLFFLLRKLILPFYSFTLFCIILPLTMFLPEAQIPAWVVCYVPGIMSILNILPAPRSFPFIVPYLLFENTMSVTKFNAMISGLFQFGSSYEWIVTKKLGRSSETDLVAFEKELDLQTETTSLLRSSSDSGLQELSRIEISKKTGNSRKNRLYRKELALAFILLTASVRSLLSAQGIHFYFLLFQGITFLVVGLDLIGEQVS 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 38817715 38822801 - Bda007394.1 Bda10g00519 14407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00519 710 PANTHER - 28 709 - -
Bda10g00519 710 Pfam Glycosyl transferase family group 2 336 548 IPR001173 -
Bda10g00519 710 SUPERFAMILY Nucleotide-diphospho-sugar transferases 258 522 IPR029044 -
Bda10g00519 710 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 219 459 IPR029044 -
Bda10g00519 710 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 6-RELATED 28 709 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00519 - - - csv:101216681 1115.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00382 Bda-Chr3:3178099 Bda10g00519 Bda-Chr10:38817715 3.51E-115 dispersed
Bda10g00519 Bda-Chr10:38817715 Bda11g00885 Bda-Chr11:8689933 0 dispersed
Bda10g00519 Bda-Chr10:38817715 Bda04g00504 Bda-Chr4:53599656 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00024 . 711 871 REM Transcription Factor Family AT1G49480 68.3 2.0e-55 212.6
Bda11g00885 . 1 690 REM Transcription Factor Family AT2G24630 76.9 0.0e+00 1077.4
Bda01g00601 BCT 1 706 REM Transcription Factor Family AT2G24630 64.7 3.7e-262 901.0
Bda03g00159 BCT 1 737 REM Transcription Factor Family AT2G24630 62.6 6.9e-261 896.7
Bda10g00519 . 5 710 REM Transcription Factor Family AT2G24630 60.7 3.0e-240 828.2
Bda04g00504 . 1 537 REM Transcription Factor Family AT2G24630 71.9 5.9e-228 787.3
Bda03g00382 . 1 190 REM Transcription Factor Family AT2G24630 91.1 2.5e-101 366.7
Bda11g00885 . 1 690 REM Transcription Factor Family AT2G24630 76.9 0.0e+00 1077.4
Bda01g00601 BCT 1 706 REM Transcription Factor Family AT2G24630 64.7 3.7e-262 901.0
Bda03g00159 BCT 1 737 REM Transcription Factor Family AT2G24630 62.6 6.9e-261 896.7
Bda10g00519 . 5 710 REM Transcription Factor Family AT2G24630 60.7 3.0e-240 828.2
Bda04g00504 . 1 537 REM Transcription Factor Family AT2G24630 71.9 5.9e-228 787.3
Bda03g00382 . 1 190 REM Transcription Factor Family AT2G24630 91.1 2.5e-101 366.7
Bda11g00885 . 1 690 REM Transcription Factor Family AT2G24630 76.9 0.0e+00 1077.4
Bda01g00601 BCT 1 706 REM Transcription Factor Family AT2G24630 64.7 3.7e-262 901.0
Bda03g00159 BCT 1 737 REM Transcription Factor Family AT2G24630 62.6 6.9e-261 896.7
Bda10g00519 . 5 710 REM Transcription Factor Family AT2G24630 60.7 3.0e-240 828.2
Bda04g00504 . 1 537 REM Transcription Factor Family AT2G24630 71.9 5.9e-228 787.3
Bda03g00382 . 1 190 REM Transcription Factor Family AT2G24630 91.1 2.5e-101 366.7
Bda15g00024 . 711 871 REM Transcription Factor Family AT1G49480 68.3 2.0e-55 212.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007034 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g00519 Bda_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0