Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00520 ATGGACAATGAACTTTTTTTCAACGGTGGACACCCACCGTCGTCCCCCATCGCATTTGAGTCAACTTCTATAATGCCCGTTTGGCACCAGCTAGCTCCGCCGCCCGATTGCTCGCCGGATAAATCCTTGGACTCCTTTTTTGATCCTTTCGCATGTGTCGTCCCGTCGCCGGAGGCGTCCAATTCTCACGTTTCCGGCGAAGGGTTTAAGATTAGGGAGCTGATAGGGAAGCTCGGAGAATTTCCTGGTTACAACACTACTCCACTGAGCTCACCTCCGAAGCTTCATTCTCCAATAATGGCGGCGAATTCTAATGTAACGGAATTCTCAGGTGATCCTGGATTTGCAGAGAGGGCGGCGAGGTTTTCTTGCTTCGGAAGTAAGAGTTTCAATGGTCGAACCAGTCAGTTTCCTACTTATAGATCTATTCCATCAATGGCGGACGGAAAGCTTTCTCGAGTTTCAAGCAGCCCCTCTCTCAAAGCATTTGGATCGAATTCTTCGTTGGAATCCACGGTTTCAGAGCAAATCTCAAACGAGTTAAACTGCAGGAAAAGAAAAGCGAATTCAAAGGGAAAACCGAAAGAACCCATTCAGTTTGACGAGAATTCAAATGGTAAGCGGAGCAAAGTGAGCGAAGAGAAGAGGTGTGGAAATGGCGGCGGGAAAACAGAGGAAGAAGACGATGGAAAAAGTTGCAGAAACGAAGAGAAACCAAACAAGACGAAGAGCAACTCTAAACCTCCAGAGCCTCCAAAAGACTACATCCATGTCAGAGCCAGAAGAGGCCAAGCCACTGACAGCCATAGCCTTGCAGAAAGAGTAAGAAGAGAGAAGATAAGCGAAAGAATGAAGCTTCTTCAAGACCTCGTTCCAGGCTGCAACAAAGTCACCGGAAAAGCGCTAATGCTCGACGAAATCATAAACTACGTTCAGTCATTACAGCGTCAAGTTGAGTTCCTTTCCATGAAGTTGGCTTCTGTCAACACCCGGACGGAATCTGCCATGGATTCTCTGGTCTCCAAAGAAGTAAGTTTAAATTCTCGAATTGGGTATTCGAAATTTTCATGA 1071 46.69 MDNELFFNGGHPPSSPIAFESTSIMPVWHQLAPPPDCSPDKSLDSFFDPFACVVPSPEASNSHVSGEGFKIRELIGKLGEFPGYNTTPLSSPPKLHSPIMAANSNVTEFSGDPGFAERAARFSCFGSKSFNGRTSQFPTYRSIPSMADGKLSRVSSSPSLKAFGSNSSLESTVSEQISNELNCRKRKANSKGKPKEPIQFDENSNGKRSKVSEEKRCGNGGGKTEEEDDGKSCRNEEKPNKTKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRTESAMDSLVSKEVSLNSRIGYSKFS 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 38831959 38833290 - Bda007395.1 Bda10g00520 14408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00520 356 MobiDBLite consensus disorder prediction 149 179 - -
Bda10g00520 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 314 IPR011598 GO:0046983
Bda10g00520 356 Coils Coil 311 331 - -
Bda10g00520 356 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 93 344 IPR024097 GO:0006355
Bda10g00520 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 330 IPR036638 GO:0046983
Bda10g00520 356 SMART finulus 270 320 IPR011598 GO:0046983
Bda10g00520 356 PANTHER - 93 344 - -
Bda10g00520 356 CDD bHLH_AtBPE_like 254 339 - -
Bda10g00520 356 Pfam Helix-loop-helix DNA-binding domain 268 315 IPR011598 GO:0046983
Bda10g00520 356 Gene3D - 261 338 IPR036638 GO:0046983
Bda10g00520 356 MobiDBLite consensus disorder prediction 180 255 - -
Bda10g00520 356 MobiDBLite consensus disorder prediction 149 255 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01075 Bda-Chr3:10797734 Bda10g00520 Bda-Chr10:38831959 1.61E-63 dispersed
Bda06g00566 Bda-Chr6:7945300 Bda10g00520 Bda-Chr10:38831959 1.93E-47 dispersed
Bda10g00520 Bda-Chr10:38831959 Bda13g00303 Bda-Chr13:3849368 1.02E-70 dispersed
Bda06g00808 Bda-Chr6:11320119 Bda10g00520 Bda-Chr10:38831959 1.39E-31 transposed
Bda11g01582 Bda-Chr11:49101555 Bda10g00520 Bda-Chr10:38831959 1.08E-39 transposed
Bda10g00520 Bda-Chr10:38831959 Bda04g00505 Bda-Chr4:53632747 2.83E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16499 PF00010 HLH 2.40E-06 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00520 - - zju:107426586 350.132