Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda10g00531 | ATGGCTAGTTCTGGCTCTCCTTGTGGCGCCTGCAAGTTTTTACGAAGAAAATGCGTCAGAGGCTGTGTTTTTGCTCCTTATTTCTGCCATGAACAAGGCGCTTCTCACTTTGCCGCCATTCACAAGGTCTTCGGAGCTAGCAATGTCTCCAAGCTTCTCGCCCATCTTCCCGTCTCCGAACGCTGCGAAGCTGCCGTTACGATCTCTTACGAAGCTCAGGCCCGCCTCCATGACCCGATTTACGGCTGCGTTTCTCATATCTTTGCTCTCCAACAGGAGGTTGTGAATTTGCAGGCGCAATTAACTTCTTTGAAAGAACAAGCTGCTCAAAGCATGTTCAACGGTTGTTCTACAGTAAACCCTGGTGAGAATTTTTGTGGGACATTTCCTCCTCAACCACAGGATCTTTCGAGTTTGGTGAAGTTGGAAAAATCAAGTGAAATGTCACAATTTCATCAGAATCTCTGCCATGCCAACTCTACAGTGCCATACTACAACGAGAAGAGCATTATGGAATCTTACTCTCTGGAGAATTTGTTCACTCCAGAAAAAAATCTCAGCTTGGGGGAGACCTCTAATTCCACATCTTCTTTTGAAATGCATTCCGGCAACAGACAGGAATGGAGTTTCGGAGATGTCGACGAGCTTCAGTCCATGGCTTTCGGCTATTTTCATCATTGA | 681 | 46.26 | MASSGSPCGACKFLRRKCVRGCVFAPYFCHEQGASHFAAIHKVFGASNVSKLLAHLPVSERCEAAVTISYEAQARLHDPIYGCVSHIFALQQEVVNLQAQLTSLKEQAAQSMFNGCSTVNPGENFCGTFPPQPQDLSSLVKLEKSSEMSQFHQNLCHANSTVPYYNEKSIMESYSLENLFTPEKNLSLGETSNSTSSFEMHSGNRQEWSFGDVDELQSMAFGYFHH | 226 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 39045475 | 39046231 | + | Bda007410.1 | Bda10g00531 | 14419 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda10g00531 | 226 | Coils | Coil | 87 | 107 | - | - | |
| Bda10g00531 | 226 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 1 | 225 | - | - | |
| Bda10g00531 | 226 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 17-RELATED | 1 | 225 | - | - | |
| Bda10g00531 | 226 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 105 | IPR004883 | - | |
| Bda10g00531 | 226 | ProSiteProfiles | LOB domain profile. | 6 | 108 | IPR004883 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda03g00898 | Bda-Chr3:7849120 | Bda10g00531 | Bda-Chr10:39045475 | 8.40E-52 | dispersed | |
| Bda05g00845 | Bda-Chr5:56998318 | Bda10g00531 | Bda-Chr10:39045475 | 3.22E-50 | dispersed | |
| Bda10g00531 | Bda-Chr10:39045475 | Bda11g01424 | Bda-Chr11:18932366 | 5.40E-32 | dispersed | |
| Bda10g00531 | Bda-Chr10:39045475 | Bda08g00229 | Bda-Chr8:2288572 | 6.62E-50 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 16500 | PF03195 | LOB | 1.20E-35 | No_clan | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda10g00531 | K13945 | - | vvi:100266975 | 287.73 |