Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00536 ATGGCGAAAATGGGCGTGTTTGATTCTGATCCGGCGTTGATTTTGAAGACCACTGAATTGAAGAGGGAGTTTCAGAGATTGGTTACGGCTATTATTGACGACGACGATTACAGTGCGGAGGCTGTCGATCAGGCGAAGGAGGCTTTGTGTGCTTTGGAGCGGTTGAAGCTCAGAAAGAGGTCGCTATCGTGGACGTCCGGGGAGGCTCTGTGCTGTCCCGATGAGTTTCGGTGTCCACTTTCTAAGGACTTGATGAGGGATCCCGTCGTAGTGGCCTCCGGCCAGACTTTCGACAGACCCTTCATCCAGCAATGGTTAAAAGCAGGAAACCGGATTTGCCCTCGTACCCAACAAGTCCTCTCCCACACAATCCTTGTTCCTAATCATTTGATTCGGGAAATGATATCTCAATGGTGTATCACTCGAGGAATTGAAATGTCCGAGCCTGTTAATTATCTCATCGATGAAGGGATGGTAACAGATTCAGATCGAGATCATTTTCTTTGTCTGCTTGTGAAAATGTCGTCAACAATATCCGATAAAAAAGCAGCGGCCAAAGAACTTCGATTGTTGACAAAGAGAATGTCCTCATTCCGGGTGCTTTTTGGGGAGTATGAAGATGCAATCCTATTGTTACTTACTCCACTATCTGAAGGCAGGTCTCAAGGAAATTGCAATGCCGAACTCCAAGAAGATGTTATCGCCACACTTTTAAATCTGTCAATCCATGACAACAATAAGAATATTGTTGCTCAAACCCCAACTGTATTTCCTCTACTTATTGAAGCATTGAGAACCGGAACCACAGAAACTCGGAGAAATGCAGCTGCAGCCCTCTTCACCTTGTCGGCTCTTGATTCGAACAAATCACTAATCGGAAAATCAGGTGCTTTGAACCCTCTTATTGAGCTTTTGGAAGAGGGTGATTCATTATCCGTGAAAGATGCCTCTTCGGCAATATTTAATGTATGTATCCTCCAAGAGAACAAGGCAAGGGCTGTAAGGGATGGAGCTATCAGGGTCATATTGAAGAAGATCACCGACCGCGTGAATGTGGATGAGTTGTTGGCTATACTAGCGATGCTTTCAACCCATCCACTGGCTGTTGAGGAAATGAAAGATCTTGGAGCTGTTTCTTGCTTGCTCGGCACTATGAAAGAGACCACTTGTGCGCAAAACAAGGAAAATTGTGTTGCCATCCTCTATGCCATCTGTTTTTATGACCGGACAAAGTGGAAGGAAATAAGGGACGAGGAAAATACTTATGGAACAATCTCGGAGCTAACTCGGAACGGAACATCTAGGGCCATGAGAAAGGCTGCCGGAATTCTCGGGAGACTGAACAGGGCTGTTAATATTACGCATACTGCATAG 1374 45.49 MAKMGVFDSDPALILKTTELKREFQRLVTAIIDDDDYSAEAVDQAKEALCALERLKLRKRSLSWTSGEALCCPDEFRCPLSKDLMRDPVVVASGQTFDRPFIQQWLKAGNRICPRTQQVLSHTILVPNHLIREMISQWCITRGIEMSEPVNYLIDEGMVTDSDRDHFLCLLVKMSSTISDKKAAAKELRLLTKRMSSFRVLFGEYEDAILLLLTPLSEGRSQGNCNAELQEDVIATLLNLSIHDNNKNIVAQTPTVFPLLIEALRTGTTETRRNAAAALFTLSALDSNKSLIGKSGALNPLIELLEEGDSLSVKDASSAIFNVCILQENKARAVRDGAIRVILKKITDRVNVDELLAILAMLSTHPLAVEEMKDLGAVSCLLGTMKETTCAQNKENCVAILYAICFYDRTKWKEIRDEENTYGTISELTRNGTSRAMRKAAGILGRLNRAVNITHTA 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 39177759 39179841 + Bda015185.1 Bda10g00536 14424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00536 457 PANTHER U BOX DOMAIN-CONTAINING 6 455 - -
Bda10g00536 457 SUPERFAMILY ARM repeat 176 447 IPR016024 -
Bda10g00536 457 SMART Ubox_2 75 138 IPR003613 GO:0004842|GO:0016567
Bda10g00536 457 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 6 455 - -
Bda10g00536 457 Pfam U-box domain 73 140 IPR003613 GO:0004842|GO:0016567
Bda10g00536 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 145 IPR013083 -
Bda10g00536 457 SUPERFAMILY RING/U-box 69 148 - -
Bda10g00536 457 Gene3D - 170 454 IPR011989 -
Bda10g00536 457 SMART arm_5 243 284 IPR000225 GO:0005515
Bda10g00536 457 SMART arm_5 365 406 IPR000225 GO:0005515
Bda10g00536 457 SMART arm_5 285 325 IPR000225 GO:0005515
Bda10g00536 457 Pfam Armadillo/beta-catenin-like repeat 288 324 IPR000225 GO:0005515
Bda10g00536 457 CDD RING-Ubox_PUB 76 118 IPR045210 -
Bda10g00536 457 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00536 Bda-Chr10:39177759 Bda12g00757 Bda-Chr12:35699324 0 dispersed
Bda10g00536 Bda-Chr10:39177759 Bda07g00590 Bda-Chr7:7230889 4.16E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00536 - - zju:107426793 636.336