Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00545 ATGGCCGAGGTTTTCCAAGGCCAGCCAATTACCAGCAATGTTGCTGGAGCACCACATCCTCCAGCAATGCGACCAAGAGTAAGAGCTAGACGAGGACAAGCTACAGATCCCCATAGTATAGCTGAAAGGTTGCGCAGAGAAAGAATTGCAGAGAGGATCAGGGCATTGCAGGAACTGGTTCCTAGTGTCAACAAGACAGATAGAGCTGCCATGCTTGATGAAATAGTAGATTATGTAAAGTTTCTGCGCCTCCAAGTGAAGGTTTTAAGCATAAGTAGATTGGGAGGTGCTGGGGCAGTAGCACCTCTTGTAACTGACATTCCATTATCATCACTGGAGGACGATGGAAGTGAAGGCGGAAGAAATCAACCAGCCTGGGAAAAGTGGTCAAATGATGGCACAGAAAGACAAGTAGCTAAGCTTATGGAAGAAAATGTTGGTGCTGCCATGCAATTTCTTCAGTCCAAGGCTCTTTGCATCATGCCCATCTCCTTGGCCTCAGCAATCTACCACACGCAACCAGCCGACACATCCAGTGTGGTCAAGCCTGAGACAAACCCACCTTCCTAG 570 48.07 MAEVFQGQPITSNVAGAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSISRLGGAGAVAPLVTDIPLSSLEDDGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPADTSSVVKPETNPPS 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 39329297 39332935 - Bda015196.1 Bda10g00545 14433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00545 189 PANTHER TRANSCRIPTION FACTOR UNE12 ISOFORM X1 2 179 - -
Bda10g00545 189 MobiDBLite consensus disorder prediction 113 132 - -
Bda10g00545 189 Gene3D - 28 89 IPR036638 GO:0046983
Bda10g00545 189 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 31 91 IPR036638 GO:0046983
Bda10g00545 189 MobiDBLite consensus disorder prediction 1 37 - -
Bda10g00545 189 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 2 179 - -
Bda10g00545 189 Pfam Helix-loop-helix DNA-binding domain 38 82 IPR011598 GO:0046983
Bda10g00545 189 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 33 82 IPR011598 GO:0046983
Bda10g00545 189 SMART finulus 39 88 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01202 Bda-Chr7:14414824 Bda10g00545 Bda-Chr10:39329297 8.77E-85 dispersed
Bda10g00545 Bda-Chr10:39329297 Bda12g00371 Bda-Chr12:4266003 4.27E-86 dispersed
Bda10g00545 Bda-Chr10:39329297 Bda04g00536 Bda-Chr4:53987459 5.57E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16501 PF00010 HLH 5.10E-08 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00545 - - twl:120008096 315.079