Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00560 ATGTTTCCTGCTGCCATCTCCAATTCAACTTCCTTGTCTGAGGAAGCTAGCGTCTCTTCTGGTACTAAAGTTCAGGACTTTGGTTGTTTTAATCCACCTCTTCCAACTATTTCTGATCCTCAACCATCTGATCAAAAGATCAAGAAAAAAAGAAGCCTACCAGGAAACCCAGACCCAGATGCTGAAGTGATTGCTTTATCTCCAAAAACCTTATTAGCTACGAATAGATTTGTGTGTGAGATTTGCAGCAAAGGGTTTCAGAGAGATCAAAATCTGCAGCTTCACAGAAGAGGACACAATCTGCCATGGAAACTGAAGCAGAGAAACAGCAAAGAGATTAAAAAGAAAGCTTATGTTTGCCCAGAACCTTCTTGCGTTCACCACCATCCCTCTAGAGCTCTAGGAGATTTAACTGGGATTAAGAAACATTTCTGCAGAAAACATGGCGAGAAAAAATGGAAATGCGAGAAATGCTCAAAGATCTACGCAGTTCAATCAGATTGGAAGGCCCACTCCAAAACTTGTGGCACTAGAGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATCACACACAGAGCATTCTGCGATGCTTTAGCAGAAGAAAGTGCAAGACTTTCAGCAAATCAAATGGCCCTAACCGCCATTTCCACCGCCGCCGCCGCCACTACTGACGAAAAGCTCCAACCGTTCTTGCCTTTCTCTTCCCACCACCATTTTCGACACCCAAACCTAAAATCTAACACTAACAGCAATCTCCTCCAAAACCCACCTCTCATCAAGACCGAAAGAGATCACCACCTTTTCCAAATCCCACCAAGCATCTCTTTCTCGACAATTTCAACCACCACCACTCCTCCATTCTTGATGCACGATCTTCCCCCACCGTTCAGCCACCCCATGCATGCAACGTCGGCCTCACCAGCACTGTCAGCCACTGCGCTGCTCCAGAAGGCTGCCACCATTGGCGCTGCGCCAACTTCTGCACAACACGCGCAGTGTGTGGGTCACATGGCTCACGGCCACCTCGACATTTGTGAGTTCGGGAGGGGGAGTCAGATGAACTCAGTGAGCTACATCTCACCGGAGTATCACCTTGGTGGGCTCACTTCCTCCAGCCTCACATCCACGTGGCATACGAGTGATCGTCTGACAAGGGACTTTCTCGGTCTGACAAGCGTTGGCCATGGAGGTTCTGGGGGCAGAGGTGGAAACGGGGAAGATTCTGACGTTAGCATAAACATAAAAGATATGCTAACGTATACAGGGGGTTTACAATTTGAACAGTTCGACCGCGACCACCAGCCAATGTTCAAGCCTCATGGGTATGGGTTCGCTGAGCCAGCCGCGTCTGAAACATGGGCGGATTGCTAG 1389 48.16 MFPAAISNSTSLSEEASVSSGTKVQDFGCFNPPLPTISDPQPSDQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRNSKEIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQMALTAISTAAAATTDEKLQPFLPFSSHHHFRHPNLKSNTNSNLLQNPPLIKTERDHHLFQIPPSISFSTISTTTTPPFLMHDLPPPFSHPMHATSASPALSATALLQKAATIGAAPTSAQHAQCVGHMAHGHLDICEFGRGSQMNSVSYISPEYHLGGLTSSSLTSTWHTSDRLTRDFLGLTSVGHGGSGGRGGNGEDSDVSINIKDMLTYTGGLQFEQFDRDHQPMFKPHGYGFAEPAASETWADC 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 39582000 39585604 + Bda015217.1 Bda10g00560 14448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00560 462 Gene3D Classic Zinc Finger 56 125 - -
Bda10g00560 462 SUPERFAMILY beta-beta-alpha zinc fingers 76 173 IPR036236 -
Bda10g00560 462 MobiDBLite consensus disorder prediction 31 60 - -
Bda10g00560 462 Pfam Zinc finger, C2H2 type 77 99 IPR013087 -
Bda10g00560 462 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
Bda10g00560 462 Gene3D Classic Zinc Finger 146 211 - -
Bda10g00560 462 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Bda10g00560 462 SMART c2h2final6 77 99 IPR013087 -
Bda10g00560 462 SMART c2h2final6 153 173 IPR013087 -
Bda10g00560 462 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 439 - -
Bda10g00560 462 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 439 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00560 Bda-Chr10:39582000 Bda12g01070 Bda-Chr12:42429856 2.10E-118 dispersed
Bda10g00560 Bda-Chr10:39582000 Bda10g00123 Bda-Chr10:3211502 2.81E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16503 PF00096 zf-C2H2 0.0079 CL0361 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00560 K25870 - zju:107425870 516.153