Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00562 ATGGTCTCCCACGCCAGAAAGATCAAATCAGAAGAGGATGAGTATTACAACTCAGAGATTTTGGAGGAGAATCTTTCTATCATACTTGAAGTTGATCCACCAAGTAGTAGCAATCCAAGAGAGATCTATGTAACAGACACTGCAATTGATGGAGCAAAACTAGCTGAAGTGGTGAGAGAGAAAAACTTGAAAGCCCTTCGTAAGTTTGGAGAAGTCGAAGGGCTTGCTACTGCCCTTAAGACAAATCTAGAGAAAGGAATCAATGGAGATCATGCTGAATTGGGAAGACGTCGAGAGATGTTTGGTTCAAACACCTACCACAAGCCACCTCCAAAAGGGTTCATTTATTTTGTGCTGGAAACTTTCAAGGACATTACCATTCTCATTCTACTAGTCTGTGCTGCCCTGTCTCTAGGTTTTGGCATCAAAGAACATGGGGTGAAAGAAGGCTGGTATGAAGGAGGAAGTATAGCTGTTGCCGTCTTTTTAGTTGTTGTCGTCTCTGCAAGCAGTAACTTCAGACAGGAAAATCAATTCGACAAGTTGTCAAAAATAAGCAACGACATCCGAGTAGAAGTACTGAGAGACAGCCGACGTCAACAAATTTCTATATTTGATGTTGTAGTCGGAGACATAGCATTCCTCAAGATTGGAGATCAAATTCCAGCCGACGGGTTGTTCTTAGACGGCCACTCTTTGCAAGTGGACGAATCAAGCATGACAGGAGAGAGTGACCACGTGGAAATAAATTCCACTATAGATCCATTCTTATTATCTGGTTCAAAGGCGGTAGATGGGTATGGTAGGATGCTAGTCACATCAGTGGGCATGAAAACGGCATGGGGGGAAATGATGAGCTCAATAACTCAGGAGAATGACGAGCAAACACCCCTACAAGTTCGACTAAATACCTTAACATCTTCTATTGGAAAGGTTGGCCTCACAGTAGCACTTTTAGTCCTCCTAGTTCTATTGGTACGATATTTCACTGGGAATACAACAGACGAGAATGGGAATAAAGAATATAATGGTAGCAAAACAGAAGTAAATGATGTATTCGATGCAATTATCCGCATTATTGCTGTTGCAGTCACCATTGTGGTGGTTGCAATCCCAGAAGGATTGCCGTTGGCCGTCACCCTCACACTTGCTTACTCCATGAAACGAATGATGGCGGATCAAGCAATGGTGAGAAAACTTTCAGCTTGTGAGACGATGGGATCCGCAACAGTTATTTGCACTGACAAAACAGGTACTCTGACATTGAATAAAATGACGGTAACCAAGTTTTGGTTAGGCCAGTCTTTCCAACAAGATGATTCTTCCCAAATAATCGCACAAAATATTTACGAGTTAATATATCAAGGAGTAAGCTTCAACACTACTGGAAGTGTTTACAAACCATTACCAGGATCCATACCTGAAATTTCTGGTAGTCCAACTGAAAAGGCGATCCTTTCTTGGGCTATTTTAGAGTTGGGAATGGACATGGAAAAGATGAAGAAATCTCATACCATCCTTCACGTGGAGACCTTCAACTCGGACAAGAAAAGGAGTGGAGTTGCAATTACAAAAGAGTCTGATGGAACCATCCATGTGCATTGGAAAGGAGCTGCAGAGATTGTACTAGCAATGTGTTCCGACTATTATGAAAGCGATGGAACCATAAAGCCTCTTGACAAGGATAAACGAAGCATAATCGAAAAAATAATCCAAGGCATGGCAGCCAGTACTCTCCGATGCATTGCTTTTGCTCATAGACAAATGTCAGAGGACGAAATTTATTCCAACAAAGACGATGGCACCCACCGAAGGCTCAAAGAAGATGATTTTACGTTGCTGGGGATTATAGGCATAAAGGATCCATGTCGACCATGGGTAAAGAAGGCAGTGCAAACATGCAAATCAGCAAGAGTTTCAATCAAAATGATTACTGGAGATAACATATTCACAGCAAAAGCCATAGCTACAGAATGTGGAATTCTAGATTCTGACTACCAAGTAAGCAATGAAGAAGTTATAGAAGGCACAGAATTTCGTAACTACACACATGAAGAGAGAATGCAAAAGGTTGACAAGATTCTTGTGATGGCCAGATCATCACCTCTTGACAAGCTTTTGATGGTTAGGTGCTTGAAACAGAAAGGTCATGTGGTTGCAGTCACCGGAGATGGCACTAATGACGCACCGGCACTAAAAGAAGCAGATGTAGGACTTTCTATGGGAGTAGAGGGCACAGAGGTGGCTAAGGAGAGCTCAGACATTGTCATCCTGGATGACAACTTCACTTCTGTTGCCACTGTTCTAAAGTGGGGGCGGTGTGTTTATAACAACATTCAGAAGTTTATCCAGTTTCAGTTAACCGTGAACGTAGCAGCTCTAGTAATCAACTTTATAGCAGCAGTTTCTGCTGGCGACGTTCCTTTAACAACGGTCCAGCTACTGTGGGTAAATCTAATTATGGACACATTGGGGGCTCTTGCTCTGGCTACTGAGCGGCCTACTAATGAGTTAATGCATCATCCCCCAGTGGGTAGGACGGAGCCCCTTATAACAAATACTATGTGGAGAAACCTTTTATCTCAAGCATTATATCAGATAGCAATCCTCTTGATATTCCAATTTAAAGGTGAATCTCTCCTCAATGTGGGAAATGATGTGAAAAATACAGTTATTTTCAATACTTTTGTTCTCTGCCAAGTTTTTAATCAATTTAACTCAAGAAGATTGGAGAAGAAGAACATCTTTGAAGGTCTTTCAAAGAATCATTTATTTCTGGGAATTGTGGGAATAACTATTCTTCTTCAAGTTATGATGGTAGAATTCCTGGGAAAGTTTGCTAAGACGGTGAAGCTAAATAGCTTGCAGTGGGGAGTTTGTATTGCTACTGCAGCACTGACATGGCCGATTGGATGGCTAGTGAAGTCTGTTCCTGTTATGGAAAAACCATTCCTCAGCTACCTCAGGAAAAGAAATTCACACCAGTAA 2988 41.8 MVSHARKIKSEEDEYYNSEILEENLSIILEVDPPSSSNPREIYVTDTAIDGAKLAEVVREKNLKALRKFGEVEGLATALKTNLEKGINGDHAELGRRREMFGSNTYHKPPPKGFIYFVLETFKDITILILLVCAALSLGFGIKEHGVKEGWYEGGSIAVAVFLVVVVSASSNFRQENQFDKLSKISNDIRVEVLRDSRRQQISIFDVVVGDIAFLKIGDQIPADGLFLDGHSLQVDESSMTGESDHVEINSTIDPFLLSGSKAVDGYGRMLVTSVGMKTAWGEMMSSITQENDEQTPLQVRLNTLTSSIGKVGLTVALLVLLVLLVRYFTGNTTDENGNKEYNGSKTEVNDVFDAIIRIIAVAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRKLSACETMGSATVICTDKTGTLTLNKMTVTKFWLGQSFQQDDSSQIIAQNIYELIYQGVSFNTTGSVYKPLPGSIPEISGSPTEKAILSWAILELGMDMEKMKKSHTILHVETFNSDKKRSGVAITKESDGTIHVHWKGAAEIVLAMCSDYYESDGTIKPLDKDKRSIIEKIIQGMAASTLRCIAFAHRQMSEDEIYSNKDDGTHRRLKEDDFTLLGIIGIKDPCRPWVKKAVQTCKSARVSIKMITGDNIFTAKAIATECGILDSDYQVSNEEVIEGTEFRNYTHEERMQKVDKILVMARSSPLDKLLMVRCLKQKGHVVAVTGDGTNDAPALKEADVGLSMGVEGTEVAKESSDIVILDDNFTSVATVLKWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSAGDVPLTTVQLLWVNLIMDTLGALALATERPTNELMHHPPVGRTEPLITNTMWRNLLSQALYQIAILLIFQFKGESLLNVGNDVKNTVIFNTFVLCQVFNQFNSRRLEKKNIFEGLSKNHLFLGIVGITILLQVMMVEFLGKFAKTVKLNSLQWGVCIATAALTWPIGWLVKSVPVMEKPFLSYLRKRNSHQ 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 39610916 39613903 - Bda015219.1 Bda10g00562 14450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00562 995 Gene3D - 91 289 - -
Bda10g00562 995 Pfam Cation transporter/ATPase, N-terminus 70 137 IPR004014 -
Bda10g00562 995 SFLD p-type atpase 395 775 IPR044492 -
Bda10g00562 995 Pfam Cation transporting ATPase, C-terminus 807 976 IPR006068 -
Bda10g00562 995 Pfam haloacid dehalogenase-like hydrolase 411 736 - -
Bda10g00562 995 Gene3D - 423 622 IPR023299 GO:0000166
Bda10g00562 995 SUPERFAMILY Calcium ATPase, transduction domain A 189 287 IPR008250 -
Bda10g00562 995 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 355 455 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda10g00562 995 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 695 802 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda10g00562 995 Pfam E1-E2 ATPase 190 391 - -
Bda10g00562 995 PRINTS Sodium/potassium-transporting ATPase signature 533 551 - -
Bda10g00562 995 PRINTS Sodium/potassium-transporting ATPase signature 406 427 - -
Bda10g00562 995 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 42 979 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Bda10g00562 995 PANTHER CATION TRANSPORTING ATPASE 48 966 - -
Bda10g00562 995 ProSitePatterns E1-E2 ATPases phosphorylation site. 415 421 IPR018303 -
Bda10g00562 995 Gene3D - 410 767 IPR023214 -
Bda10g00562 995 SFLD Haloacid Dehalogenase 395 775 - -
Bda10g00562 995 PANTHER CALCIUM-TRANSPORTING ATPASE 48 966 - -
Bda10g00562 995 SUPERFAMILY HAD-like 411 827 IPR036412 -
Bda10g00562 995 SMART Cation_ATPase_N_a_2 68 142 IPR004014 -
Bda10g00562 995 Gene3D - 120 970 - -
Bda10g00562 995 PRINTS P-type cation-transporting ATPase superfamily signature 615 626 - -
Bda10g00562 995 PRINTS P-type cation-transporting ATPase superfamily signature 637 647 - -
Bda10g00562 995 PRINTS P-type cation-transporting ATPase superfamily signature 722 741 - -
Bda10g00562 995 PRINTS P-type cation-transporting ATPase superfamily signature 236 250 - -
Bda10g00562 995 PRINTS P-type cation-transporting ATPase superfamily signature 746 758 - -
Bda10g00562 995 PRINTS P-type cation-transporting ATPase superfamily signature 413 427 - -
Bda10g00562 995 SUPERFAMILY Calcium ATPase, transmembrane domain M 70 979 IPR023298 -
Bda10g00562 995 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 420 619 IPR023299 GO:0000166
Bda10g00562 995 CDD P-type_ATPase_Ca_PMCA-like 96 855 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00859 Bda-Chr3:7442225 Bda10g00562 Bda-Chr10:39610916 2.53E-95 dispersed
Bda10g00562 Bda-Chr10:39610916 Bda12g00373 Bda-Chr12:4278000 0 dispersed
Bda10g00562 Bda-Chr10:39610916 Bda01g00590 Bda-Chr1:32895573 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00562 K01537 - pvy:116145841 1407.12