Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda10g00600 | ATGCTTCCTTGGGGAGGTCTAACTTGCTGTTTGAGTGCAGCTGCTCTTTACCTACTCGGAAGGAGTAGCGGGAGGGATGCTCACCTGTTGAATTCTGTCCCACGAGTTAATCAATTGAAGGAGCTGGCACAATTACTTGATGCCGAGTGTATATTACCTTTGGTTGTTGCAATTTCTGGAAGAGTTAGCTCTGATGCCCCGATAAACTGTGAGTTCAGTGGTTTACGAGGTGTAATTGTGGAGGAAACGGCAGAACAACATTTTCTGAAACACAATGATACCGGTTCATGGATACAAGATTCAGCCTTAATGTTGTCTATGAGTAAAGAGGTCCCCTGGTACTTGGATGATGGCACAGGTCGTGCATTTGTGGTAGGAGCTCGAAATGCCACAGGCTTTATATTGCCAATAGCGAGTGAGGTTTTTGAAGAATCTGGTCGATCTCTTGTGCGTGGAACATTAGATTATCTCCAAGGTCTTAAGATGCTTGGAGTGAAGCGAATAGAGAGGGTATTGCCAACTGGTACTTCTTTGACTGTGGTTGGCGAGGCAGCCAAGGATGACATTGGTACCATTCGAATTCAGCGACCCTACAAAGGACCATTTTATGTCTCCCCAAAACCGATTGATCAACTCATTGCTAATCTTGGGAAGTGGGCAAGGTTGGTTTTGGCTGCTGCTGCGAAGCGATCAAGTCAAGAAAATGAAGGTTCAACTGAAAGGACTGACAAGGCAGCTGATGGTACTAAGAGAGACCAGTTGATGCCAGATCTTTGTGTGATATGCCTTGAGCAAAATTATAATGCTGTTTTCGTCCCGTGTGGACACATGTGCTGCTGTACGACATGCTCCTCCCACCTGACCAATTGTCCCCTTTGCAGACGAAGAATTGAACAGGTAGTGAGAACGTTCCGCCATTGA | 921 | 45.93 | MLPWGGLTCCLSAAALYLLGRSSGRDAHLLNSVPRVNQLKELAQLLDAECILPLVVAISGRVSSDAPINCEFSGLRGVIVEETAEQHFLKHNDTGSWIQDSALMLSMSKEVPWYLDDGTGRAFVVGARNATGFILPIASEVFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEAAKDDIGTIRIQRPYKGPFYVSPKPIDQLIANLGKWARLVLAAAAKRSSQENEGSTERTDKAADGTKRDQLMPDLCVICLEQNYNAVFVPCGHMCCCTTCSSHLTNCPLCRRRIEQVVRTFRH | 306 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 39993667 | 39997966 | + | Bda015262.1 | Bda10g00600 | 14488 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda10g00600 | 306 | ProSiteProfiles | Zinc finger RING-type profile. | 259 | 294 | IPR001841 | - | |
Bda10g00600 | 306 | PANTHER | - | 1 | 222 | IPR044231 | GO:0004842|GO:0016567 | |
Bda10g00600 | 306 | PANTHER | - | 223 | 273 | IPR044231 | GO:0004842|GO:0016567 | |
Bda10g00600 | 306 | Pfam | Zinc finger, C3HC4 type (RING finger) | 257 | 300 | - | - | |
Bda10g00600 | 306 | SUPERFAMILY | RING/U-box | 253 | 300 | - | - | |
Bda10g00600 | 306 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 226 | 305 | IPR013083 | - | |
Bda10g00600 | 306 | CDD | RING-HC_LRSAM1 | 258 | 297 | - | - | |
Bda10g00600 | 306 | Pfam | E3 Ubiquitin ligase | 86 | 227 | IPR022170 | GO:0004842|GO:0006996|GO:0016567 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda09g01432 | Bda-Chr9:46134857 | Bda10g00600 | Bda-Chr10:39993667 | 2.40E-07 | dispersed | |
Bda10g00600 | Bda-Chr10:39993667 | Bda11g00635 | Bda-Chr11:6347556 | 4.58E-08 | dispersed | |
Bda10g00600 | Bda-Chr10:39993667 | Bda14g00372 | Bda-Chr14:2708711 | 2.46E-08 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda10g00600 | K15688 | - | qsu:111998754 | 538.88 |