Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00600 ATGCTTCCTTGGGGAGGTCTAACTTGCTGTTTGAGTGCAGCTGCTCTTTACCTACTCGGAAGGAGTAGCGGGAGGGATGCTCACCTGTTGAATTCTGTCCCACGAGTTAATCAATTGAAGGAGCTGGCACAATTACTTGATGCCGAGTGTATATTACCTTTGGTTGTTGCAATTTCTGGAAGAGTTAGCTCTGATGCCCCGATAAACTGTGAGTTCAGTGGTTTACGAGGTGTAATTGTGGAGGAAACGGCAGAACAACATTTTCTGAAACACAATGATACCGGTTCATGGATACAAGATTCAGCCTTAATGTTGTCTATGAGTAAAGAGGTCCCCTGGTACTTGGATGATGGCACAGGTCGTGCATTTGTGGTAGGAGCTCGAAATGCCACAGGCTTTATATTGCCAATAGCGAGTGAGGTTTTTGAAGAATCTGGTCGATCTCTTGTGCGTGGAACATTAGATTATCTCCAAGGTCTTAAGATGCTTGGAGTGAAGCGAATAGAGAGGGTATTGCCAACTGGTACTTCTTTGACTGTGGTTGGCGAGGCAGCCAAGGATGACATTGGTACCATTCGAATTCAGCGACCCTACAAAGGACCATTTTATGTCTCCCCAAAACCGATTGATCAACTCATTGCTAATCTTGGGAAGTGGGCAAGGTTGGTTTTGGCTGCTGCTGCGAAGCGATCAAGTCAAGAAAATGAAGGTTCAACTGAAAGGACTGACAAGGCAGCTGATGGTACTAAGAGAGACCAGTTGATGCCAGATCTTTGTGTGATATGCCTTGAGCAAAATTATAATGCTGTTTTCGTCCCGTGTGGACACATGTGCTGCTGTACGACATGCTCCTCCCACCTGACCAATTGTCCCCTTTGCAGACGAAGAATTGAACAGGTAGTGAGAACGTTCCGCCATTGA 921 45.93 MLPWGGLTCCLSAAALYLLGRSSGRDAHLLNSVPRVNQLKELAQLLDAECILPLVVAISGRVSSDAPINCEFSGLRGVIVEETAEQHFLKHNDTGSWIQDSALMLSMSKEVPWYLDDGTGRAFVVGARNATGFILPIASEVFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEAAKDDIGTIRIQRPYKGPFYVSPKPIDQLIANLGKWARLVLAAAAKRSSQENEGSTERTDKAADGTKRDQLMPDLCVICLEQNYNAVFVPCGHMCCCTTCSSHLTNCPLCRRRIEQVVRTFRH 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 39993667 39997966 + Bda015262.1 Bda10g00600 14488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00600 306 ProSiteProfiles Zinc finger RING-type profile. 259 294 IPR001841 -
Bda10g00600 306 PANTHER - 1 222 IPR044231 GO:0004842|GO:0016567
Bda10g00600 306 PANTHER - 223 273 IPR044231 GO:0004842|GO:0016567
Bda10g00600 306 Pfam Zinc finger, C3HC4 type (RING finger) 257 300 - -
Bda10g00600 306 SUPERFAMILY RING/U-box 253 300 - -
Bda10g00600 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 305 IPR013083 -
Bda10g00600 306 CDD RING-HC_LRSAM1 258 297 - -
Bda10g00600 306 Pfam E3 Ubiquitin ligase 86 227 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g01432 Bda-Chr9:46134857 Bda10g00600 Bda-Chr10:39993667 2.40E-07 dispersed
Bda10g00600 Bda-Chr10:39993667 Bda11g00635 Bda-Chr11:6347556 4.58E-08 dispersed
Bda10g00600 Bda-Chr10:39993667 Bda14g00372 Bda-Chr14:2708711 2.46E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00600 K15688 - qsu:111998754 538.88