Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00629 ATGGCAATGCGCAGCTTCAGATCCATTTTAGCTATTTTCGTCGTAGTTCTCTTCTTCTCATCCAGCTATGGAGCAGAAGAAGATTCTGTTTCTCTCTCTAGAATTTTATGCAAGGGCACTCTCTACACAGATCTATGCTCGTCGACTCTCTCCTCCTTCTCAGACCTCTCTTCCAAATCTCTGCAACAGATAGTCCTCGAATCAGTCAACTACACCACCTCCGCAGTTCGAGCAGCTTTCTCAAACTGCTCCACCATTAACAAAAGACGGAAGGCGCTCGACCCAGTTGAAAAGGCTGCCATTTACGACTGTCTGGAGCTTCTTGATATCACCATTGACTTCCTCTACTCCGTCCTCTCCAACCTCTCGCCTGGAAAGCAAGCTTCCAGCTACTTCGATCAGTTGCAGACTTTTCTCAGCGCTGCAATGACGAACCAGTACACTTGCCTAGATGGGTTTTCTCACAATCGAGGCAGGGTGAGAGAAGGGATAGAGAAGCTACTGCGTAAAGTCATCCACCATGTGAGTAATAATCTTGTTTTGCTGAACAAAATTCCGAGAGCTGGGAAACGGAAAGTGAAGGGCGAGATATTTCTTGAGTATGGAAAGATGAAAGATGGGTTTCCGTCCTGGATTTCGCCGACAGATAGGAAATTGTTACAGTCGTCGGTAAACGAAACCACGTATGATCTGATCGTTGCTAAAGACGGAACTGGAAACTTTACCACCATTGGAGAGGCAGTGAATGCAGCTCCAAATTCGAGTACTACCAGGTTTGTAATATATATCAAGGCCGGAGCTTACTTTGAGAACGTGGAGGTAGGGAAGACGAAGACGAATTTAATGTTCATCGGAGATGGAATCGGAAAGACTGTTATCAAAGCCAACCGAAGTGTGGTTGACAACTCCACTACTTTCCGGTCGGCCACCGTCGCCGCTGTGGGAACCGGATTTATAGCGAAAGGCATAACGATCGAGAACTCCGCCGGAGCCATCAAGCACCAAGCAGTGGCCTTCAGGAGCAGCGCCGACCTATCCGCCTTTTACCTATGTAGCTTCGTGGCCTACCAAGACACGCTCTACGCTCAGTCTCTCCGCCAGTTCTATAGGAACTGTGACATCTACGGCACCATTGACTTCATCTTCGGTAACGCGGCGGTTGTCTTCCAAAACTGCAGCCTCTACGCGCGGAGACCGCTTGACAACCAGCAGAACATCTTCACCGCGCAAGGCAGACAAGATCCGAACCAGAACACGGGGACTTCAATTATCAATTGCAAGGTCGCCGCCGCCGCCGATCTGATTCCCGTGCAATCGAATTTCCAAACGTATCTTGGTCGGCCGTGGAAGGAGTACTCCAGAACTGTTTACCTGCAATCTAACCTGGGCGATTTGATCGATCCATCCGGCTGGTTGGAGTGGAACGGAACGTTCGCGCTGGACACTCTCTTCTACGGCGAGTATAAGAATCGGGGACCGGGCTCGAACACAACGGCGAGAGTGAACTGGCCTGGGTACAAGGTCATCACCAACGCAACTGAAGCTATGGCGTTTACAGTTGCAGAGTTTATCCAGGGGACGGACTGGCTAAACTCCACCGGCATTCCTTACTTTCCATTCTTGAGTTGA 1629 49.66 MAMRSFRSILAIFVVVLFFSSSYGAEEDSVSLSRILCKGTLYTDLCSSTLSSFSDLSSKSLQQIVLESVNYTTSAVRAAFSNCSTINKRRKALDPVEKAAIYDCLELLDITIDFLYSVLSNLSPGKQASSYFDQLQTFLSAAMTNQYTCLDGFSHNRGRVREGIEKLLRKVIHHVSNNLVLLNKIPRAGKRKVKGEIFLEYGKMKDGFPSWISPTDRKLLQSSVNETTYDLIVAKDGTGNFTTIGEAVNAAPNSSTTRFVIYIKAGAYFENVEVGKTKTNLMFIGDGIGKTVIKANRSVVDNSTTFRSATVAAVGTGFIAKGITIENSAGAIKHQAVAFRSSADLSAFYLCSFVAYQDTLYAQSLRQFYRNCDIYGTIDFIFGNAAVVFQNCSLYARRPLDNQQNIFTAQGRQDPNQNTGTSIINCKVAAAADLIPVQSNFQTYLGRPWKEYSRTVYLQSNLGDLIDPSGWLEWNGTFALDTLFYGEYKNRGPGSNTTARVNWPGYKVITNATEAMAFTVAEFIQGTDWLNSTGIPYFPFLS 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40316479 40318591 + Bda015292.1 Bda10g00629 14517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00629 542 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 187 IPR035513 -
Bda10g00629 542 SUPERFAMILY Pectin lyase-like 229 538 IPR011050 -
Bda10g00629 542 Pfam Pectinesterase 230 526 IPR000070 GO:0030599|GO:0042545
Bda10g00629 542 Pfam Plant invertase/pectin methylesterase inhibitor 36 179 IPR006501 GO:0004857
Bda10g00629 542 PANTHER PECTINESTERASE 34 538 - -
Bda10g00629 542 ProSitePatterns Pectinesterase signature 2. 374 383 IPR033131 -
Bda10g00629 542 PANTHER PECTINESTERASE 34 538 - -
Bda10g00629 542 SMART PMEI_2 28 181 IPR006501 GO:0004857
Bda10g00629 542 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 184 IPR006501 GO:0004857
Bda10g00629 542 Gene3D - 224 540 IPR012334 -
Bda10g00629 542 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 185 IPR035513 -
Bda10g00629 542 CDD PMEI-like_3 36 187 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00123 Bda-Chr5:5965310 Bda10g00629 Bda-Chr10:40316479 9.41E-158 dispersed
Bda07g01931 Bda-Chr7:36823276 Bda10g00629 Bda-Chr10:40316479 3.05E-124 dispersed
Bda09g01054 Bda-Chr9:40784923 Bda10g00629 Bda-Chr10:40316479 9.01E-143 dispersed
Bda10g00629 Bda-Chr10:40316479 Bda12g01041 Bda-Chr12:42213162 2.03E-166 dispersed
Bda10g01177 Bda-Chr10:45743637 Bda10g00629 Bda-Chr10:40316479 2.43E-154 transposed
Bda14g01055 Bda-Chr14:9011639 Bda10g00629 Bda-Chr10:40316479 3.66E-24 transposed
Bda10g00629 Bda-Chr10:40316479 Bda04g00624 Bda-Chr4:54818420 6.83E-24 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00629 K01051 - jre:108994228 718.768