Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00722 ATGTGCGGGGGTACAGAACAATCACAATTTTCATCTACTCGTTCTTCATCTATTACAGAAACTGAAACTAACGCAAGAGTTATGAATCACCTGAACATAGAAACAGATGATTCTTTTTATAGCTTACTGGAATTTGCTTCCGACAATAATGCAGAAGGCATTAAGAAATTTATTGATCATGATGTATCTTCCCTTGATAGAAAAGGACTTTGGTATATTCGGCCAAAAGGATCAAAACAAGTCATCTGTGACTGGAGAACTCCGTTGATGGTTGCCGCTACATATGGTAGTGTGGATGTTTTGAACCTTATTCTTTCATACTCTGAGGTCAATGTAAATCTATCATGTGGTCGGGATAGAAGCACTGCTCTCCACTGTGCTGCTTCTGGCGGATCCATTAATGTAGTTGAAGTTATTTTACTACTTCTATCATCTGGTGCAGATCCAAAGTGTGTGGATGCTAGTGGTAATCGACCTATTGATGTTATCTTTGTTCATCCGAAAATAAAAAGCATGGGGGTGAAACTTGAGGATCTTCTCAAAATCAATACTTACAATACATCTTTTGATTTGCCCTTATCCATTGAGACCTTGGGGGCAGTGAGGGCAGTGTCACCTATTCGTTCATCATCAGTAGAAAATGTCTCATCTCCCTCTCTGTTTACATCCTCTTCTGTGGCATTGAAATGCAATGATGGTCGACTGAATTTGGCTGCAGAGAAGAAAGAGTACCCAGCAGACCCGTCTCTCCCTGATATTAAAAGTAGCATGTATGCAACAGATGAGTTTCGAATGTTCTCATTCAAAGTACGACCTTGTTCGCGAGCATATTCTCATGACTGGACTGATTGCCCTTTTGTCCATCCAGGAGAGAATGCTCGGCGAAGAGATCCAAGGAAGTACCATTACAGCTGCATGCCTTGCCCTAATTTCAAGAAAGGGCCTTGCAGGCATGGTGATAAGTGTGAATATGCACACGGAGTGTTTGAGAGCTGGCTCCATCCTGCTCAATATCGAACTCAGCTTTGTAAGGATGGAACAAGTTGCAATAGGAGAGTTTGCTTTTTTGCGCACACAATCAAGGAGCTCCGTCCTTCACATCGTTCAATTGGATCTGGTGGAAATTCAGTGCACTGCAATTCATCTCCTTCCAATGTAATTGACATGGTAACTGCAATTAGCCATTTACCTGGTTTCCCGTCGTTAGTCTCTGGCTCGTCTCTTTCCCCTTCTAGCTCGGGTCTGTCTCCCTCTGTGAATGGTGTATCACAATCAATTTCCTGGCCTCAACCAAGTGTTCTATCCATTCATCTGCCTGGAAGCAATCTCCAATCAAGTCGCTTGAGTTGTTCTCCTGTCTCCCGAAACAGATCTTGTGGAGATTCAAATATGATACCAGAATTTGACTCCGTTCAACAGATTTCAAATGACTTGACCTGTTTCTCACGATCCCAGATGAATTTCGAATCTATTGTGCATTCTAAAATGCAACCTCCCTCAAACATTGACGACATTTATACTTCTCATATCTCATCATCACCCAAATTTCCTGACCCTGCTACAACGTCTATCTTTTCCCCGACATACAAATCAATTGCACTGAATCAATGTTGGAAGCAGAAGCAAATGCCAACTCCTATAAATCAAAGCATTTTGTCTCCAAGAAGTGTTGATTATCCTCTATTGCAGGCTTCTTTTGAACTCTCATCAAGGAGAAAAATATTGCCAAGAAATGTGGAACCAATGGCCCCTGTAACTTCTCGAATCTCTGCTTATGCTCTAGAAGACATGCAGCACCAGCAACTTCGTAGTTTGGTCTCTAGAGACCTGGCAACTAACGTTATTGCATCTCCTCTTATGTGCTCTTCAAATTCTTGGCCTACATGCGGATCTCCAGAAGAAGTAGATTGGTCTGTGAATGGGGATGATTTGGCTCTGTTTGAGAGATCGAAGCTCAAGAAAAATGCGGAAGAGCCTGACCTGTCATGGATCCAAACGCTGGTCAAGGAACCTGCACCAGAGATGATAAGATAG 2034 42.38 MCGGTEQSQFSSTRSSSITETETNARVMNHLNIETDDSFYSLLEFASDNNAEGIKKFIDHDVSSLDRKGLWYIRPKGSKQVICDWRTPLMVAATYGSVDVLNLILSYSEVNVNLSCGRDRSTALHCAASGGSINVVEVILLLLSSGADPKCVDASGNRPIDVIFVHPKIKSMGVKLEDLLKINTYNTSFDLPLSIETLGAVRAVSPIRSSSVENVSSPSLFTSSSVALKCNDGRLNLAAEKKEYPADPSLPDIKSSMYATDEFRMFSFKVRPCSRAYSHDWTDCPFVHPGENARRRDPRKYHYSCMPCPNFKKGPCRHGDKCEYAHGVFESWLHPAQYRTQLCKDGTSCNRRVCFFAHTIKELRPSHRSIGSGGNSVHCNSSPSNVIDMVTAISHLPGFPSLVSGSSLSPSSSGLSPSVNGVSQSISWPQPSVLSIHLPGSNLQSSRLSCSPVSRNRSCGDSNMIPEFDSVQQISNDLTCFSRSQMNFESIVHSKMQPPSNIDDIYTSHISSSPKFPDPATTSIFSPTYKSIALNQCWKQKQMPTPINQSILSPRSVDYPLLQASFELSSRRKILPRNVEPMAPVTSRISAYALEDMQHQQLRSLVSRDLATNVIASPLMCSSNSWPTCGSPEEVDWSVNGDDLALFERSKLKKNAEEPDLSWIQTLVKEPAPEMIR 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 41641769 41643802 + Bda015396.1 Bda10g00722 14610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00722 677 SMART c3hfinal6 302 328 IPR000571 GO:0046872
Bda10g00722 677 SMART c3hfinal6 337 360 IPR000571 GO:0046872
Bda10g00722 677 SUPERFAMILY Ankyrin repeat 32 164 IPR036770 -
Bda10g00722 677 Pfam Ankyrin repeats (3 copies) 83 151 IPR002110 GO:0005515
Bda10g00722 677 ProSiteProfiles Ankyrin repeat profile. 119 154 IPR002110 GO:0005515
Bda10g00722 677 ProSiteProfiles Zinc finger C3H1-type profile. 307 329 IPR000571 GO:0046872
Bda10g00722 677 Gene3D - 304 365 - -
Bda10g00722 677 MobiDBLite consensus disorder prediction 1 21 - -
Bda10g00722 677 PANTHER UNKEMPT FAMILY MEMBER 23 675 IPR045234 -
Bda10g00722 677 ProSiteProfiles Ankyrin repeat region circular profile. 119 148 - -
Bda10g00722 677 Gene3D - 5 194 IPR036770 -
Bda10g00722 677 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 23 675 - -
Bda10g00722 677 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 327 IPR000571 GO:0046872
Bda10g00722 677 SMART ANK_2a 119 151 IPR002110 GO:0005515
Bda10g00722 677 SMART ANK_2a 37 67 IPR002110 GO:0005515
Bda10g00722 677 SMART ANK_2a 84 114 IPR002110 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda05g00458 Bda10g00722 CCT
Bda05g00458 Bda10g00722 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00722 Bda-Chr10:41641769 Bda11g00674 Bda-Chr11:6761347 0 dispersed
Bda10g00722 Bda-Chr10:41641769 Bda12g00153 Bda-Chr12:1353204 0 wgd
Bda10g00722 Bda-Chr10:41641769 Bda05g00457 Bda-Chr5:50858516 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16514 PF12796 Ank_2 4.10E-08 CL0465 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00722 - - tcc:18614626 722.62