Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00782 ATGGCTGCCGATGTTATTTTCACCGTCAAGGACGATAATCCGATCGGGGCAAGTCTGATCGGAAGGGCATACATACCCGTTGAAGAGATTTTAGATGGGCAAGAAGTGGATAAATGGGTTGAAATCTTAGATGCTGACAAAAATCCCATCAGGGGAAACTCTAAGATTCATGTTAAGCTTCAATATTTCGAGGTCACTAAGGATCGTTGTTGGAGTCAAGGAATTCGGAGCGCGAAATTTCCCGGAGTTCCTTATACGTTCTACTCGCAGAGACAAGGGTGTAAGGTCTCTTTGTACCAAGATGCACATATCCCGAATGGTTTCATCCCAAAAATCCCGCTCGCCGGAGGGAAGTTCTTCGAGCCTCACCGGTGTTGGGAAGATGTTTTCGATGCTATAACCAATGCAAAACACCTGATTTACATAACGGGTTGGTCTGTTTACACTGAAATTTCGCTTATAAGGGACTCGAGGAGGCCTAAAGCCGGTGGAGATATCCTACTCGGTGAGCTGCTTAAGAAAAAAGCAAGTGAAGGTGTTAGAGTTCTTATGCTTGTTTGGGATGATAGAACATCTGTTGGTGTGTTGAAAAAAGATGGTCTGATGGCCACTCATGACCAAGAAACAGAACAATTCTTCAAAAATAGCGATGTGCATTGCGTCCTCTGCCCTCGAAATCCCGACGATGGGGGAAGCATAGTTCAAGATTTACAAATCTCAACTATGTTCACTCATCATCAGAAGATCGTTGTGGTCGATAGCGCGATGCCAATCAAAGGATCGAAAAAACGGCGAATCGTGAGTTTTGTGGGCGGTATTGATCTTTGTGATGGAAGATATGATACTCCATTCCATTCGCTTTTCAGGACGTTGGATACTGCCCATCACAATGATTTTCATCAACCGAACTTTGCTGGTGCTACAATTGCGAAAGGCGGACCGAGAGAGCCTTGGCACGACATTCATTCACGACTCGAAGGACCAATTGCATGGGATGTTTTGTTTAATTTTGAGCAAAGATGGAGAAAGCAAGGAGGAAAAGATATCCTTCTTCAACTGAGGGAGCTCGAAGAAGTAATCATCCCGCCTTCTCCGGTTATGTTCCCGGACGATCGCGAAACATGGAATGTTCAGTTATTTCGGTCGATCGATGGGGGGGCTGCTTTCGGCTTTCCGGAGGCGCCTGAAGATGCTGCAAGAGCAGGCCTTGTCAGTGGGAAAGACAACATCATCGATAGAAGCATTCAGGATGCTTACATCAACGCTATTCGACGGGCAAAAGATTTTATCTACATCGAAAATCAGTATTTCCTCGGAAGCTGTTTCGATTGGAGCCCTGATGGTATTAAGCCCGAAGATATCGGAGCTCTGCATTTGATTCCAAAGGAGCTCTCTCTGAAGATAGTTAGTAAGATTGAAGCAGGAGAGAGATTTACTGTCTATGTTGTTGTTCCTATGTGGCCGGAGGGAATGCCGGAGAGTGGATCAGTTCAGGCCATTTTAGATTGGCAGAAGAGGACGATGGAGATGATGTATAAAGATATCATTCAGGCTCTAAACGCCAAGGGCATCGAGGACGACCCTCGAAACTATTTGACGTTTTTCTGCCTCGGAAACCGAGAACTCAAGAAGTCCGGCGAGTACGAGCCGTCGGAAAAACCAGAGGAAGATACAGATTATATGAGAGCCCAGCAGGCTAGGCGCTTCATGATTTATGTTCATGCCAAGATGATGATTGGTAAGTGGCATAAACCTCTCTCTGTGAATCCTCTGATCTGTTTATCAAGTCTAATGGCTTTGCCCCTTTTTGCAGTGGACGACGAATACATAATCATCGGCTCGGCCAACATCAACCAGAGATCGATGGACGGAGCAAGAGACTCTGAGATAGCCATGGGAGCCTACCAGCCGTACCATCTGTCGACCCACGTCCCAGCCCGTGGTCAAGTCCATGGCTTTCGCATGGCTCTATGGTACGAACACCTCGGCATGCTTGACGATTGCTTTCTTCAGCCAGAGAGCGAGGAATGTGTTCGGAAGGTGAACCTGATTGCTGACAAATACTGGGACCTCTACTCAAACGAAAACCTCGAGCATGACTTGCCCGGTCACTTGCTTCGCTATCCGGTTGGAATTGCGAGCGAAGGTGCAGTCACGGAGCTGCCGGGGTTCGAGCATTTTCCGGACACAAAAGCTCGTGTGCTCGGAACCAAATCTGACTACCTCCCTCCCATTCTGACCACTTAG 2247 47.13 MAADVIFTVKDDNPIGASLIGRAYIPVEEILDGQEVDKWVEILDADKNPIRGNSKIHVKLQYFEVTKDRCWSQGIRSAKFPGVPYTFYSQRQGCKVSLYQDAHIPNGFIPKIPLAGGKFFEPHRCWEDVFDAITNAKHLIYITGWSVYTEISLIRDSRRPKAGGDILLGELLKKKASEGVRVLMLVWDDRTSVGVLKKDGLMATHDQETEQFFKNSDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSAMPIKGSKKRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHNDFHQPNFAGATIAKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDILLQLRELEEVIIPPSPVMFPDDRETWNVQLFRSIDGGAAFGFPEAPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKDFIYIENQYFLGSCFDWSPDGIKPEDIGALHLIPKELSLKIVSKIEAGERFTVYVVVPMWPEGMPESGSVQAILDWQKRTMEMMYKDIIQALNAKGIEDDPRNYLTFFCLGNRELKKSGEYEPSEKPEEDTDYMRAQQARRFMIYVHAKMMIGKWHKPLSVNPLICLSSLMALPLFAVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLSTHVPARGQVHGFRMALWYEHLGMLDDCFLQPESEECVRKVNLIADKYWDLYSNENLEHDLPGHLLRYPVGIASEGAVTELPGFEHFPDTKARVLGTKSDYLPPILTT 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42226594 42228840 - Bda015451.1 Bda10g00782 14670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00782 748 Gene3D C2 domain 1 73 IPR035892 -
Bda10g00782 748 Gene3D Endonuclease Chain A 391 579 - -
Bda10g00782 748 SUPERFAMILY Phospholipase D/nuclease 603 678 - -
Bda10g00782 748 CDD PLDc_pPLDalpha_2 407 641 - -
Bda10g00782 748 PIRSF PLD_plant 1 581 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Bda10g00782 748 PIRSF PLD_plant 600 748 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Bda10g00782 748 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 241 279 IPR001736 GO:0003824
Bda10g00782 748 SMART pld_4 594 621 IPR001736 GO:0003824
Bda10g00782 748 SMART pld_4 241 279 IPR001736 GO:0003824
Bda10g00782 748 Gene3D Endonuclease Chain A 118 358 - -
Bda10g00782 748 PANTHER PHOSPHOLIPASE D 603 748 IPR015679 -
Bda10g00782 748 PANTHER PHOSPHOLIPASE D ALPHA 1 603 748 - -
Bda10g00782 748 Pfam Phospholipase D Active site motif 241 279 IPR001736 GO:0003824
Bda10g00782 748 Pfam Phospholipase D C terminal 666 738 IPR024632 -
Bda10g00782 748 SUPERFAMILY Phospholipase D/nuclease 370 579 - -
Bda10g00782 748 PANTHER PHOSPHOLIPASE D 1 579 IPR015679 -
Bda10g00782 748 PANTHER PHOSPHOLIPASE D ALPHA 1 1 579 - -
Bda10g00782 748 SUPERFAMILY Phospholipase D/nuclease 67 361 - -
Bda10g00782 748 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 602 621 IPR001736 GO:0003824
Bda10g00782 748 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 64 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00782 K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4] - jre:109013902 1328.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00065 Bda-Chr6:656717 Bda10g00782 Bda-Chr10:42226594 1.06E-172 dispersed
Bda08g00221 Bda-Chr8:1963338 Bda10g00782 Bda-Chr10:42226594 0 dispersed
Bda10g00782 Bda-Chr10:42226594 Bda10g00858 Bda-Chr10:43057432 0 dispersed
Bda09g01040 Bda-Chr9:40567454 Bda10g00782 Bda-Chr10:42226594 0 transposed
Bda10g00782 Bda-Chr10:42226594 Bda04g00828 Bda-Chr4:58155369 0 wgd
Bda10g00782 Bda-Chr10:42226594 Bda05g00535 Bda-Chr5:53046427 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g537 . Blo06g00662 . Bda10g00782 Bpe06g00699 . . . . . Cma01g00139 . Car01g00123 . Sed05g1449 . Cpe17g00574 Bhi01g03552 Tan04g2586 Cmetu07g1549 Lac11g0678 Hepe02g1369 . . Cla07g01209 Cam07g1296 Cec07g1387 Cco07g1343 Clacu07g1268 Cmu07g1245 Cre07g1625 . . . . Lsi02g02718 Csa07g02159 . Cme01g02610 Blo07g00714 . . . . . . Bma15g00411 . Cmo01g00146 . Cma08g00678 . Car08g00568 . Cpe02g01652 . Bhi09g00029 Tan06g0407 . . . . . Cla09g00253 Cam09g0275 Cec09g0278 Cco09g0271 Clacu09g0279 . Cre09g0266 Lsi07g00464 . Chy01g02000 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda10g00782 . 1 748 Phospholipase D Gene Family (Wang group) AT1G52570 79.7 0.0e+00 1274.2
Bda04g00828 CCT,ECH 1 723 Phospholipase D Gene Family (Wang group) AT1G52570 80.9 0.0e+00 1269.2
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT1G52570 62.8 6.6e-295 1010.0
Bda05g00535 CCT,ECH 18 373 Phospholipase D Gene Family (Wang group) AT1G52570 74.4 8.9e-167 584.3
Bda10g00858 . 35 787 Phospholipase D Gene Family (Wang group) AT1G55180 58.7 1.1e-256 882.9
Bda04g00828 CCT,ECH 1 723 Phospholipase D Gene Family (Wang group) AT3G15730 82.7 0.0e+00 1288.9
Bda10g00782 . 1 748 Phospholipase D Gene Family (Wang group) AT3G15730 79.7 0.0e+00 1276.2
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT3G15730 63.9 4.4e-299 1023.8
Bda05g00535 CCT,ECH 18 368 Phospholipase D Gene Family (Wang group) AT3G15730 74.6 1.1e-164 577.4
Bda04g00828 CCT,ECH 5 723 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 3.1e-283 971.1
Bda10g00782 . 5 748 Phospholipase D Gene Family (Wang group) AT5G25370 62.2 1.3e-281 965.7
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT5G25370 58.7 2.7e-263 904.8
Bda05g00535 CCT,ECH 10 373 Phospholipase D Gene Family (Wang group) AT5G25370 64.5 3.8e-140 495.7
Bda08g00221 . 61 1063 Phospholipase D Gene Family (Wang group) AT2G42010 67.8 0.0e+00 1426.8
Bda06g00065 . 205 965 Phospholipase D Gene Family (Wang group) AT2G42010 59.4 1.9e-281 965.7
Bda08g00221 . 295 1063 Phospholipase D Gene Family (Wang group) AT4G00240 77.7 0.0e+00 1252.3
Bda06g00065 . 246 970 Phospholipase D Gene Family (Wang group) AT4G00240 59.2 1.1e-259 892.9
Bda08g00221 . 234 848 Phospholipase D Gene Family (Wang group) AT4G11830 65.7 8.9e-247 849.7
Bda06g00065 . 191 779 Phospholipase D Gene Family (Wang group) AT4G11830 55.3 8.5e-189 657.1
Bda08g00221 . 234 1063 Phospholipase D Gene Family (Wang group) AT4G11840 66.0 0.0e+00 1151.3
Bda06g00065 . 213 968 Phospholipase D Gene Family (Wang group) AT4G11840 57.0 1.5e-254 875.9
Bda08g00221 . 226 1063 Phospholipase D Gene Family (Wang group) AT4G11850 69.1 0.0e+00 1211.4
Bda06g00065 . 213 965 Phospholipase D Gene Family (Wang group) AT4G11850 59.6 1.5e-273 939.1
Bda08g00221 . 240 889 Phospholipase D Gene Family (Wang group) AT4G35790 50.1 9.2e-197 683.7
Bda08g00300 . 111 1157 Phospholipase D Gene Family (Wang group) AT3G05630 59.0 0.0e+00 1244.6
Bda07g01281 . 37 971 Phospholipase D Gene Family (Wang group) AT3G05630 51.1 7.7e-296 1013.4
Bda08g00300 . 111 1034 Phospholipase D Gene Family (Wang group) AT3G16785 69.7 0.0e+00 1313.5
Bda07g01281 . 19 848 Phospholipase D Gene Family (Wang group) AT3G16785 50.7 1.5e-256 882.9
Bda04g00828 CCT,ECH 1 723 Phospholipase D Gene Family (Wang group) AT3G15730 82.7 0.0e+00 1288.9
Bda10g00782 . 1 748 Phospholipase D Gene Family (Wang group) AT3G15730 79.7 0.0e+00 1276.2
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT3G15730 63.9 4.4e-299 1023.8
Bda05g00535 CCT,ECH 18 368 Phospholipase D Gene Family (Wang group) AT3G15730 74.6 1.1e-164 577.4
Bda10g00782 . 1 748 Phospholipase D Gene Family (Wang group) AT1G52570 79.7 0.0e+00 1274.2
Bda04g00828 CCT,ECH 1 723 Phospholipase D Gene Family (Wang group) AT1G52570 80.9 0.0e+00 1269.2
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT1G52570 62.8 6.6e-295 1010.0
Bda05g00535 CCT,ECH 18 373 Phospholipase D Gene Family (Wang group) AT1G52570 74.4 8.9e-167 584.3
Bda08g00221 . 61 1063 Phospholipase D Gene Family (Wang group) AT2G42010 67.8 0.0e+00 1426.8
Bda06g00065 . 205 965 Phospholipase D Gene Family (Wang group) AT2G42010 59.4 1.9e-281 965.7
Bda08g00221 . 295 1063 Phospholipase D Gene Family (Wang group) AT4G00240 77.7 0.0e+00 1252.3
Bda06g00065 . 246 970 Phospholipase D Gene Family (Wang group) AT4G00240 59.2 1.1e-259 892.9
Bda08g00221 . 226 1063 Phospholipase D Gene Family (Wang group) AT4G11850 69.1 0.0e+00 1211.4
Bda06g00065 . 213 965 Phospholipase D Gene Family (Wang group) AT4G11850 59.6 1.5e-273 939.1
Bda08g00221 . 234 848 Phospholipase D Gene Family (Wang group) AT4G11830 65.7 8.9e-247 849.7
Bda06g00065 . 191 779 Phospholipase D Gene Family (Wang group) AT4G11830 55.3 8.5e-189 657.1
Bda08g00221 . 234 1063 Phospholipase D Gene Family (Wang group) AT4G11840 66.0 0.0e+00 1151.3
Bda06g00065 . 213 968 Phospholipase D Gene Family (Wang group) AT4G11840 57.0 1.5e-254 875.9
Bda08g00221 . 240 889 Phospholipase D Gene Family (Wang group) AT4G35790 50.1 9.2e-197 683.7
Bda10g00858 . 35 787 Phospholipase D Gene Family (Wang group) AT1G55180 58.7 1.1e-256 882.9
Bda04g00828 CCT,ECH 5 723 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 3.1e-283 971.1
Bda10g00782 . 5 748 Phospholipase D Gene Family (Wang group) AT5G25370 62.2 1.3e-281 965.7
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT5G25370 58.7 2.7e-263 904.8
Bda05g00535 CCT,ECH 10 373 Phospholipase D Gene Family (Wang group) AT5G25370 64.5 3.8e-140 495.7
Bda08g00300 . 111 1034 Phospholipase D Gene Family (Wang group) AT3G16785 69.7 0.0e+00 1313.5
Bda07g01281 . 19 848 Phospholipase D Gene Family (Wang group) AT3G16785 50.7 1.5e-256 882.9
Bda08g00300 . 111 1157 Phospholipase D Gene Family (Wang group) AT3G05630 59.0 0.0e+00 1244.6
Bda07g01281 . 37 971 Phospholipase D Gene Family (Wang group) AT3G05630 51.1 7.7e-296 1013.4
Bda04g00828 CCT,ECH 1 723 Phospholipase D Gene Family (Wang group) AT3G15730 82.7 0.0e+00 1288.9
Bda10g00782 . 1 748 Phospholipase D Gene Family (Wang group) AT3G15730 79.7 0.0e+00 1276.2
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT3G15730 63.9 4.4e-299 1023.8
Bda05g00535 CCT,ECH 18 368 Phospholipase D Gene Family (Wang group) AT3G15730 74.6 1.1e-164 577.4
Bda10g00782 . 1 748 Phospholipase D Gene Family (Wang group) AT1G52570 79.7 0.0e+00 1274.2
Bda04g00828 CCT,ECH 1 723 Phospholipase D Gene Family (Wang group) AT1G52570 80.9 0.0e+00 1269.2
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT1G52570 62.8 6.6e-295 1010.0
Bda05g00535 CCT,ECH 18 373 Phospholipase D Gene Family (Wang group) AT1G52570 74.4 8.9e-167 584.3
Bda04g00828 CCT,ECH 5 723 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 3.1e-283 971.1
Bda10g00782 . 5 748 Phospholipase D Gene Family (Wang group) AT5G25370 62.2 1.3e-281 965.7
Bda09g01040 . 2 754 Phospholipase D Gene Family (Wang group) AT5G25370 58.7 2.7e-263 904.8
Bda05g00535 CCT,ECH 10 373 Phospholipase D Gene Family (Wang group) AT5G25370 64.5 3.8e-140 495.7
Bda10g00858 . 35 787 Phospholipase D Gene Family (Wang group) AT1G55180 58.7 1.1e-256 882.9
Bda08g00221 . 61 1063 Phospholipase D Gene Family (Wang group) AT2G42010 67.8 0.0e+00 1426.8
Bda06g00065 . 205 965 Phospholipase D Gene Family (Wang group) AT2G42010 59.4 1.9e-281 965.7
Bda08g00221 . 295 1063 Phospholipase D Gene Family (Wang group) AT4G00240 77.7 0.0e+00 1252.3
Bda06g00065 . 246 970 Phospholipase D Gene Family (Wang group) AT4G00240 59.2 1.1e-259 892.9
Bda08g00221 . 226 1063 Phospholipase D Gene Family (Wang group) AT4G11850 69.1 0.0e+00 1211.4
Bda06g00065 . 213 965 Phospholipase D Gene Family (Wang group) AT4G11850 59.6 1.5e-273 939.1
Bda08g00221 . 234 848 Phospholipase D Gene Family (Wang group) AT4G11830 65.7 8.9e-247 849.7
Bda06g00065 . 191 779 Phospholipase D Gene Family (Wang group) AT4G11830 55.3 8.5e-189 657.1
Bda08g00221 . 234 1063 Phospholipase D Gene Family (Wang group) AT4G11840 66.0 0.0e+00 1151.3
Bda06g00065 . 213 968 Phospholipase D Gene Family (Wang group) AT4G11840 57.0 1.5e-254 875.9
Bda08g00221 . 240 889 Phospholipase D Gene Family (Wang group) AT4G35790 50.1 9.2e-197 683.7
Bda08g00300 . 111 1034 Phospholipase D Gene Family (Wang group) AT3G16785 69.7 0.0e+00 1313.5
Bda07g01281 . 19 848 Phospholipase D Gene Family (Wang group) AT3G16785 50.7 1.5e-256 882.9
Bda08g00300 . 111 1157 Phospholipase D Gene Family (Wang group) AT3G05630 59.0 0.0e+00 1244.6
Bda07g01281 . 37 971 Phospholipase D Gene Family (Wang group) AT3G05630 51.1 7.7e-296 1013.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000683 2 9 4 3 3 3 2 2 3 3 3 3 3 2 3 3 3 5 3 2 3 3 3 3 2 3 3 4 6 4 98
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g00782 Bda_Chr10 FPKM 9.672727 7.521771 19.562542 16.854162 14.490773 18.468552 13.706974 12.060859 13.145686