Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00822 ATCAGAATGACTAGAAAGAAGGTGAAGCTTTCGTACATATCAAATGATTCAGCAAGAAAAGCAACGTTTAAGAAAAGGAAGAAGGGACTGATGAAGAAGGTGAGCGAACTCACGACCCTTTGCGGGATCGATGCTTGCGCGATCATTTACAGCCCCTACGACTCTCAGCCTGAGGTGTGGCCTTCTGCCGGGGGAGTCCAGCGCGTGGTGGCTCAGTTCAAGAAAATGCCAGAGATGGAGCAGAGCAAGAAGATGGTGAACCAGGAGAGCTTTCTTCGCCAGCGGATCGCCAAAGCACAAGAGATGTTGAAGAAGCAAAGGAAGGAGAACCGAGAGAAGGAGATTCGCCAATTAATGTTCGACTGCCTAACCGGAACAAAGGGCCTGAACAGCATGAGCATGGTGGAGCTGAACGAGACGGGGTGGTTGGTTGATAGCACGCTCAAGGATGTAAACAAGAGGATCGAGTCGCTCCAGAAAGAGGCCGCCAGTCGTAAGAACATCGCCCACCCCGTCAATCCAGCTGTGGGGGGAGGCGGCGGAGCGGTAGCAGAAGATGGTTTCGGGGGGAGAGGATGGGAGAAGGAGGAGCCATGGTTCATGGATATTGGCTTTGGTGGGGACGACATGATTCTGCCTCTTGCAGATCCTAATCTCAACTCTCTCTATCTTTGGTCCAACGCGTTCTTTCCCTGA 696 52.16 IRMTRKKVKLSYISNDSARKATFKKRKKGLMKKVSELTTLCGIDACAIIYSPYDSQPEVWPSAGGVQRVVAQFKKMPEMEQSKKMVNQESFLRQRIAKAQEMLKKQRKENREKEIRQLMFDCLTGTKGLNSMSMVELNETGWLVDSTLKDVNKRIESLQKEAASRKNIAHPVNPAVGGGGGAVAEDGFGGRGWEKEEPWFMDIGFGGDDMILPLADPNLNSLYLWSNAFFP 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42625821 42626516 + Bda015492.1 Bda10g00822 14710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00822 231 SUPERFAMILY SRF-like 4 97 IPR036879 GO:0003677|GO:0046983
Bda10g00822 231 Coils Coil 148 168 - -
Bda10g00822 231 ProSiteProfiles MADS-box domain profile. 3 51 IPR002100 GO:0003677|GO:0046983
Bda10g00822 231 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677|GO:0046983
Bda10g00822 231 PRINTS MADS domain signature 40 61 IPR002100 GO:0003677|GO:0046983
Bda10g00822 231 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677|GO:0046983
Bda10g00822 231 Gene3D - 15 120 IPR036879 GO:0003677|GO:0046983
Bda10g00822 231 CDD MADS_SRF_like 4 87 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bda10g00822 231 Coils Coil 89 116 - -
Bda10g00822 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 53 IPR002100 GO:0003677|GO:0046983
Bda10g00822 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Bda10g00822 231 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 3 167 - -
Bda10g00822 231 SMART madsneu2 3 62 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00420 Bda-Chr1:30737872 Bda10g00822 Bda-Chr10:42625821 1.06E-31 dispersed
Bda08g01106 Bda-Chr8:25093608 Bda10g00822 Bda-Chr10:42625821 1.36E-138 dispersed
Bda10g00822 Bda-Chr10:42625821 Bda13g01554 Bda-Chr13:38743510 3.20E-79 dispersed
Bda10g00822 Bda-Chr10:42625821 Bda13g01546 Bda-Chr13:38692167 3.23E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16521 PF00319 SRF-TF 1.60E-18 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00822 - - vvi:100254549 288.115