Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda10g00822 | ATCAGAATGACTAGAAAGAAGGTGAAGCTTTCGTACATATCAAATGATTCAGCAAGAAAAGCAACGTTTAAGAAAAGGAAGAAGGGACTGATGAAGAAGGTGAGCGAACTCACGACCCTTTGCGGGATCGATGCTTGCGCGATCATTTACAGCCCCTACGACTCTCAGCCTGAGGTGTGGCCTTCTGCCGGGGGAGTCCAGCGCGTGGTGGCTCAGTTCAAGAAAATGCCAGAGATGGAGCAGAGCAAGAAGATGGTGAACCAGGAGAGCTTTCTTCGCCAGCGGATCGCCAAAGCACAAGAGATGTTGAAGAAGCAAAGGAAGGAGAACCGAGAGAAGGAGATTCGCCAATTAATGTTCGACTGCCTAACCGGAACAAAGGGCCTGAACAGCATGAGCATGGTGGAGCTGAACGAGACGGGGTGGTTGGTTGATAGCACGCTCAAGGATGTAAACAAGAGGATCGAGTCGCTCCAGAAAGAGGCCGCCAGTCGTAAGAACATCGCCCACCCCGTCAATCCAGCTGTGGGGGGAGGCGGCGGAGCGGTAGCAGAAGATGGTTTCGGGGGGAGAGGATGGGAGAAGGAGGAGCCATGGTTCATGGATATTGGCTTTGGTGGGGACGACATGATTCTGCCTCTTGCAGATCCTAATCTCAACTCTCTCTATCTTTGGTCCAACGCGTTCTTTCCCTGA | 696 | 52.16 | IRMTRKKVKLSYISNDSARKATFKKRKKGLMKKVSELTTLCGIDACAIIYSPYDSQPEVWPSAGGVQRVVAQFKKMPEMEQSKKMVNQESFLRQRIAKAQEMLKKQRKENREKEIRQLMFDCLTGTKGLNSMSMVELNETGWLVDSTLKDVNKRIESLQKEAASRKNIAHPVNPAVGGGGGAVAEDGFGGRGWEKEEPWFMDIGFGGDDMILPLADPNLNSLYLWSNAFFP | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 42625821 | 42626516 | + | Bda015492.1 | Bda10g00822 | 14710 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda10g00822 | 231 | SUPERFAMILY | SRF-like | 4 | 97 | IPR036879 | GO:0003677|GO:0046983 | |
Bda10g00822 | 231 | Coils | Coil | 148 | 168 | - | - | |
Bda10g00822 | 231 | ProSiteProfiles | MADS-box domain profile. | 3 | 51 | IPR002100 | GO:0003677|GO:0046983 | |
Bda10g00822 | 231 | PRINTS | MADS domain signature | 5 | 25 | IPR002100 | GO:0003677|GO:0046983 | |
Bda10g00822 | 231 | PRINTS | MADS domain signature | 40 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bda10g00822 | 231 | PRINTS | MADS domain signature | 25 | 40 | IPR002100 | GO:0003677|GO:0046983 | |
Bda10g00822 | 231 | Gene3D | - | 15 | 120 | IPR036879 | GO:0003677|GO:0046983 | |
Bda10g00822 | 231 | CDD | MADS_SRF_like | 4 | 87 | IPR033897 | GO:0000981|GO:0000987|GO:0045944 | |
Bda10g00822 | 231 | Coils | Coil | 89 | 116 | - | - | |
Bda10g00822 | 231 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 12 | 53 | IPR002100 | GO:0003677|GO:0046983 | |
Bda10g00822 | 231 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 167 | - | - | |
Bda10g00822 | 231 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 | 3 | 167 | - | - | |
Bda10g00822 | 231 | SMART | madsneu2 | 3 | 62 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g00420 | Bda-Chr1:30737872 | Bda10g00822 | Bda-Chr10:42625821 | 1.06E-31 | dispersed | |
Bda08g01106 | Bda-Chr8:25093608 | Bda10g00822 | Bda-Chr10:42625821 | 1.36E-138 | dispersed | |
Bda10g00822 | Bda-Chr10:42625821 | Bda13g01554 | Bda-Chr13:38743510 | 3.20E-79 | dispersed | |
Bda10g00822 | Bda-Chr10:42625821 | Bda13g01546 | Bda-Chr13:38692167 | 3.23E-78 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16521 | PF00319 | SRF-TF | 1.60E-18 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda10g00822 | - | - | vvi:100254549 | 288.115 |