Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00843 ATGGAGCTTCTCCTTAAGAATCGGCGGCTGTTTTCGACATTGTTCTTCACATGTTTTGCTTTGCATGGTGGTCGTGCAGGCCCAGAATCAGTCAGGTTTTCCTCTGCAATTCTTCATCTTCTCCATATGCTTCATAGGCACAGAGAGTTTACTTCTTCTGTTTTTCCAGACTTCATCAGCATAGATTGTGGGTTGCCAGAGAAAAACAACACCGATGGAGGGACCGGAATATATTATGTCTCTGACGAGGGATTCACAGACGAAGGCATAAACATGAACATATCTGCAGATAACCAGCAAATGTTTTCCGATCAACAGCAGTTCTTGAATGTAAGAAGCTTTCCAAACGGAACAAAGAATTGCTACAAACTACGACCTTCGAAAGGCAAAGGTCGATACTATTTGATACGAGCCAGATTTATGTATGGAAACTACGACAATCTAAGTACATCCCCAATTTTTGACTTATACATGGATGTTAATTTCTGGGATACAGTCACATTCAATGCAGAAACAGAAATTTTCACCAAGGAAATTATATATTTTCCTCCATCAGATTATGTTAATGTTTGTCTTGTAAATAAAGGCTCTGGAACACCATTTATATCAGTTTTGGAGCTCAGGCTTCTGAATAATCAAAGTTACGCACCTGATTCTGGGTCATTAGAGCTCTTTTTGCGCTTAAATTTCAACTCGGAAGTCTCTCGTATCAGGTATTCTGCAACTGATCAGGGAGGAGATTACTCAGATCGAATATGGTATGCTTCAAACTCTATGAACTGGAAAAACATAAGCACAAACAATGCTGTGGATCAAGGAGTCTATAACTCCTTCGAAGTAGCTGCTTCTGTCATGAGAACTGCAATAACACCAGCAAATAATAGTGGTCAAATGGGATTTTACTGGATTTCTACAAATAGCACCTACCAATATTATGTTTACATGCATTTTGCTGAGATCCAAATTCTAAGAAGCAATGAATCTAGAGAATTTGATATCTTTTTAAATGGAAATACATGGTTCCAATCGTTCTCTCCTTCCTATTTATCCACATCCACAGTGTACAGTACTGGAGCAGTAGGGCCTTATGATAGATACGAGTTTTGGCTCAATAAAACTGGTAATTCAACACACCCACCTTTAATCAACGCTATTGAGGTTTACAGGGTAGTTCATCTTCGAGATCTGCAAACTGACCAAAAAGATGTTGATGCTGTTACGAACATCAAGTCTACGTATCAGCTGAGGAGAAACTGGGTAGCAGATCCTTGTGCTCCAAAAGCTTTTATATGGGACGGTCTTCTCTGTAATTACAGTGGCTTAAATTCTGATTCCAACATACCCAGAATAATAAGCTTGAACCTTTCATCGAGTGGTATAAATGGGGAGATTGCTCCATCAATAGCCAGTCTCACAGAGCTTCAGTACCTGGATTTGTCTAACAATAGCTTACAAGGATCTTTTCCTGATTTTCTTTCTAGCCTGCCATTCTTGAAAGTTCTAAATCTCGAGCGAAACAATCTCTCTGGATCAGTTCCTCTTGTGCTCCTTGAAAGATCAAAGAACAGCTCACTTTCTTTGCAATTGGACCATAATCCACATCTCTGTACATCAGAATATTGTTCAACTGAAACCGATATAAAGAATAAGAACAATGTTGTAATACCAGTTGTAGCAGCAGTTGGAGGATTTATTTTTCTCTCATTATTAGTAATAAGCAGCTGTCATATGGAGATTTAA 1740 38.79 MELLLKNRRLFSTLFFTCFALHGGRAGPESVRFSSAILHLLHMLHRHREFTSSVFPDFISIDCGLPEKNNTDGGTGIYYVSDEGFTDEGINMNISADNQQMFSDQQQFLNVRSFPNGTKNCYKLRPSKGKGRYYLIRARFMYGNYDNLSTSPIFDLYMDVNFWDTVTFNAETEIFTKEIIYFPPSDYVNVCLVNKGSGTPFISVLELRLLNNQSYAPDSGSLELFLRLNFNSEVSRIRYSATDQGGDYSDRIWYASNSMNWKNISTNNAVDQGVYNSFEVAASVMRTAITPANNSGQMGFYWISTNSTYQYYVYMHFAEIQILRSNESREFDIFLNGNTWFQSFSPSYLSTSTVYSTGAVGPYDRYEFWLNKTGNSTHPPLINAIEVYRVVHLRDLQTDQKDVDAVTNIKSTYQLRRNWVADPCAPKAFIWDGLLCNYSGLNSDSNIPRIISLNLSSSGINGEIAPSIASLTELQYLDLSNNSLQGSFPDFLSSLPFLKVLNLERNNLSGSVPLVLLERSKNSSLSLQLDHNPHLCTSEYCSTETDIKNKNNVVIPVVAAVGGFIFLSLLVISSCHMEI 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42829620 42832034 + Bda015513.2 Bda10g00843 14731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00843 579 PANTHER OS07G0107800 PROTEIN-RELATED 57 575 - -
Bda10g00843 579 Gene3D Ribonuclease Inhibitor 403 530 IPR032675 -
Bda10g00843 579 Pfam Leucine rich repeat 452 508 IPR001611 GO:0005515
Bda10g00843 579 ProSiteProfiles Leucine-rich repeat profile. 473 496 IPR001611 GO:0005515
Bda10g00843 579 Pfam Malectin-like domain 61 390 IPR024788 -
Bda10g00843 579 Gene3D - 223 391 - -
Bda10g00843 579 PRINTS Leucine-rich repeat signature 474 487 - -
Bda10g00843 579 PRINTS Leucine-rich repeat signature 495 508 - -
Bda10g00843 579 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PROTEIN-RELATED 57 575 - -
Bda10g00843 579 SUPERFAMILY L domain-like 402 529 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda10g00843 Bda12g01092 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00843 Bda-Chr10:42829620 Bda05g01245 Bda-Chr5:60314525 1.28E-45 dispersed
Bda11g01074 Bda-Chr11:10483279 Bda10g00843 Bda-Chr10:42829620 1.91E-29 dispersed
Bda10g00843 Bda-Chr10:42829620 Bda12g01091 Bda-Chr12:42635243 8.68E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00843 - - cic:CICLE_v10027271mg 475.707