Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda10g00844 | ATGAAGGAGATGATTTATAGAGCAGCAGCTTTTAGGCCAGTGAACTTGGGTTTAGAGGCAGTGGAGAAGCCGAAGAGGAAGAACGTTAGAATATCAACTGATCCACAAACTGTAGCAGCCAGACAAAGGAGGGAGAGAATTGGAGAGAGAATTAGGGTTTTGCAGAAATTGGTTCCTGGTGGGAGCAAGATGGACACTGCATCCATGCTAGATGAGGCTGCAAATTACCTCAAATTCCTCAAATCACAGATCAAGGCTCTTGAAAATCTTGGGCAAGAGATTGACATTATGAATAAGTCCCCACCTTCAAGCATTGCTTTCTCGTTCAACCCATCTTTTCCCATGCAAACCCACTTTTCAATCAAAACCCTAATCACATCCACTCTTTTCAGAAATGAAAAGGCCGATCCAAATTACCCATTTTAG | 426 | 42.72 | MKEMIYRAAAFRPVNLGLEAVEKPKRKNVRISTDPQTVAARQRRERIGERIRVLQKLVPGGSKMDTASMLDEAANYLKFLKSQIKALENLGQEIDIMNKSPPSSIAFSFNPSFPMQTHFSIKTLITSTLFRNEKADPNYPF | 141 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 42835826 | 42836251 | - | Bda015514.1 | Bda10g00844 | 14732 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda10g00844 | 141 | PANTHER | TRANSCRIPTION FACTOR BHLH87 | 1 | 121 | - | - | |
| Bda10g00844 | 141 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 31 | 80 | IPR011598 | GO:0046983 | |
| Bda10g00844 | 141 | Pfam | Helix-loop-helix DNA-binding domain | 41 | 80 | IPR011598 | GO:0046983 | |
| Bda10g00844 | 141 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 1 | 121 | IPR045843 | GO:0003700|GO:0006355 | |
| Bda10g00844 | 141 | Coils | Coil | 70 | 90 | - | - | |
| Bda10g00844 | 141 | SMART | finulus | 37 | 86 | IPR011598 | GO:0046983 | |
| Bda10g00844 | 141 | Gene3D | - | 35 | 100 | IPR036638 | GO:0046983 | |
| Bda10g00844 | 141 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 36 | 95 | IPR036638 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda08g01375 | Bda-Chr8:54326517 | Bda10g00844 | Bda-Chr10:42835826 | 8.86E-31 | dispersed | |
| Bda10g00372 | Bda-Chr10:35118386 | Bda10g00844 | Bda-Chr10:42835826 | 9.83E-31 | dispersed | |
| Bda10g00844 | Bda-Chr10:42835826 | Bda01g01589 | Bda-Chr1:51739577 | 5.90E-18 | dispersed | |
| Bda10g00844 | Bda-Chr10:42835826 | Bda05g00578 | Bda-Chr5:53771342 | 4.13E-60 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 16525 | PF00010 | HLH | 7.10E-06 | No_clan | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda10g00844 | - | - | gmx:100778004 | 201.06 |