Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00864 ATGTCAGGTTTAGCTCCAGAAGGATCCCAGTTTGATGCCAATCAATATGATTCCAAAATGATTGAGATACAATCTGAAGGACATGATTTCTTCACCTCTTATGAAGAAGTTTATGAAAGCTTTGATTCTATGGGTTTACAAGAAAACCTGCTGAGGGGCATTTATGCCTATGGTTTTGAGAAGCCCTCTGCAATCCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTTGATGTGATTCAACAGGCTCAATCTGGAACTGGAAAAACTGCAACCTTTTGCTCTGGAATTTTACAGCAACTCGACTATGGTTTAGTTCAGTGCCAGGCACTGGTTCTAGCACCCACAAGGGAACTGGCTCAACAGATTGAGAAGGTCATGCGAGCTCTAGGTGATTATCTTGGTGTCAAGGTTCATGCTTGTGTTGGAGGGACCAGTGTACGTGAGGATCAACGCATTCTTCAAGTCGGGGTGCATGTTGTTGTTGGTACTCCTGGTCGAGTATTTGACATGTTGCAAAGACAGTCTCTCCGCCCAGACTACATTAAGATGTTTGTTTTGGATGAGGCTGATGAGATGCTTTCGCGTGGATTCAAGGATCAGATTTACGACATTTTCCAGCTTTTGCCATCAGAAGTTCAGGTTGGAGTTTTCTCAGCAACAATGCCACCTGAAGCTCTGGAAATCACAAGGAAGTTTATGAAGAAGCCTGTAAGAATCTTGGTGAAGCGTGATGAACTTACTTTGGAAGGTATCAAGCAGTTCTATGTTGATGTTGACAAGGAAGATTGGAAACTTGACACACTATGTGATCTTTATGAGACTCTGGCCATCACCCAGAGCGTCATCTTTGTCAACACACGACGCAAGGTGGATTGGCTGACAGACAAGATGCGCAGTCGGGATCACACAGTATCAGCCACCCATGGAGACATGGACCAGAACACCAGAGATATAATTATGCGAGAATTCCGCTCTGGGTCTTCTCGTGTTCTCATAACAACTGATCTTCTGGCTCGTGGTATTGATGTCCAGCAAGTTTCACTTGTTATAAACTACGATCTGCCGACACAACCAGAAAATTACCTTCATCGAATTGGTCGAAGCGGACGATTTGGAAGAAAGGGGGTCGCCATCAACTTTGTGACAAGCGATGATGGCAGAATGATATCCGACATTCAGAAGTTTTACAACGTGGTAATCGAGGAGCTGCCGGCTAACGTTGCTGATCTCCTGTGA 1239 44.63 MSGLAPEGSQFDANQYDSKMIEIQSEGHDFFTSYEEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQVGVHVVVGTPGRVFDMLQRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSEVQVGVFSATMPPEALEITRKFMKKPVRILVKRDELTLEGIKQFYVDVDKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDGRMISDIQKFYNVVIEELPANVADLL 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43138489 43140165 - Bda015541.1 Bda10g00864 14752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00864 412 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 186 194 IPR000629 -
Bda10g00864 412 Pfam Helicase conserved C-terminal domain 265 373 IPR001650 -
Bda10g00864 412 PANTHER RNA HELICASE 23 412 - -
Bda10g00864 412 SMART ultradead3 58 255 IPR014001 -
Bda10g00864 412 CDD DEADc_EIF4A 44 241 - -
Bda10g00864 412 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 39 67 IPR014014 GO:0003724
Bda10g00864 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 392 IPR027417 -
Bda10g00864 412 Gene3D - 29 247 IPR027417 -
Bda10g00864 412 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 23 412 - -
Bda10g00864 412 Gene3D - 248 412 IPR027417 -
Bda10g00864 412 SMART helicmild6 292 373 IPR001650 -
Bda10g00864 412 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 251 412 IPR001650 -
Bda10g00864 412 Pfam DEAD/DEAH box helicase 64 225 IPR011545 GO:0003676|GO:0005524
Bda10g00864 412 CDD SF2_C_DEAD 252 382 - -
Bda10g00864 412 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 240 IPR014001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00999 Bda-Chr1:43582058 Bda10g00864 Bda-Chr10:43138489 1.62E-65 dispersed
Bda10g00864 Bda-Chr10:43138489 Bda13g00354 Bda-Chr13:4397992 1.98E-85 dispersed
Bda05g00426 Bda-Chr5:49979059 Bda10g00864 Bda-Chr10:43138489 0 transposed
Bda05g01202 Bda-Chr5:60007131 Bda10g00864 Bda-Chr10:43138489 1.23E-67 transposed
Bda10g00205 Bda-Chr10:7017277 Bda10g00864 Bda-Chr10:43138489 1.32E-09 transposed
Bda13g01595 Bda-Chr13:39516012 Bda10g00864 Bda-Chr10:43138489 0 transposed
Bda10g00864 Bda-Chr10:43138489 Bda05g00585 Bda-Chr5:53837001 2.59E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00864 K03257 - csv:101223055 775.393