Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00875 ATGGCGCTGGGAAAAGAAATGATTGGTTCTTCAGTGCTTGGGAGCTCTTTATTTGTTTCCTCGACTAAGGTTTTTCTGACGGGTAGGTTTGGTCATAAGGTGGCTCAGGAGAGAAGAAGAGTGGCGCATTTGAGGAAGTCTTTGACGAGCCCTGTCGCCGCCATTAGTGAGGATCTGGTCAGGTTTCCTCCGATTGCAGGGAAGCCTGTGAAGTTCAAGGCGAGAGCTGTAGTTACTGTGAGAAACAAGGATAAAGAAGGCATCAAAGAGGCTATGCTGAAGCGTTTAGATGCTTTCACTGACAAGATTGGCCAAAACATCGTTCTTCAGATCTTCAGCACCGAGGTTGATCCAAAAACTAAAGCTCCGAAGAAGAGCAATGAAGGTGTGCTGATAAATTGGTCGAAGAAATCTAGTGTAAAAGCAGAGAGGGTAAATTACACAGCAGAATTCCTTTTGGATTCATATTTCGGAGAGCCTGGAGCCATTACAGTGAGCAACAAGCACCAGCAAGAGTTCTTCTTGGAGAAGATCACCATTGAAGGTTTTCCTGGTGGTCCTGTCCATCTTCCTTGCAATTCTTGGGTCCAATCCAGAAAAGATCACCCTGAACCGCGGATTTTCTTTTCCAATAAGCCATACCTACCCGGCGAGACTCCGGCCGGACTTAGAGTATTAAGAGAGAAAGATCTGAGTAGCACGAGGGGAGATGGAAAAGGAGTCAGGAAATTATCCGACAGAATACATGACTTCGACCAGTACAATGACTTGGGAAATCCCGACAAGGGGGCCGAATTCGCCCGCCCTGTTCTCGGCGGCAAAGAAATTCCGTACCCGAGAAGGTGTCGCACCGGAAGAATTCCGACCGACTCCGATGTAAGTGCGGAGAGCAGAGTGGAGAAGCCATTGCCGATGTACGTGCCGAGAGATGAGCAATTCGAGGAGTCTAAGCAGGACACATTTGCACTTGGAAGGCTAAAGGCTGTAATGCACAGCTTAATTCCTCTGCTGAAGGTCACCATGTTGACTCGAAACCATGATTTCAAGGGCTTCGATGAAATCGACAGCCTTTACAGTGAAGGGTTGCTCCTCGAATTAGGGTTACAAGATGAGCTCCTACAGAGACTTCCATTGCCTAAAGTTGTTCGTAAAATCCGAGAATCCAGCCCGGGATTTATCAAATATGACGCTCCCAAAATACTTTCCAAGGATAAATTCGCTTGGCTCAGAGACGATGAATTTGCCCGTCAAGCGATTGCCGGGATTAATCCGGTTAAATTGGAGAGGCTTACGGTTTTCCCGCCAATTAGCGAGCTTGATCCGGAGGTTTACGGCCCAGTAGAGTCTGCTCTGAAAGAAGAACACATTTCCGGCCAACTCAACGGCATGACAGTTCAACAGGCTTTGGAGGAAAAGAAGCTGTTTATGATTGACTACCATGATATTTACCTTCCGTTTCTGGAACGAATGAACTCTATTGACGGCCGAAAAGCATATGCAACTCGGACCATTTTCTTCTTGACCCCCGTGGGTACTCTCAAGCCAGTTGCAATCGAACTCAGCCTTCCGCCGACCGCGCCAATTTCCAGGAGAAAGCTGGTCGTCACCCCTCCTGCCGATGCTACTGGCAATTGGCAATGGCAGCTGGCCAAGGCTCACGTTTGTTCCAACGATGCCGGGGCTCATCAACTCGTTAATCATTGGCTAAGAACCCATGCCACTTTGGAGCCGTTTATCTTGTCGGCACATCGCCAGCTGAGTGTAATGCATCCCATTTACAAGCTATTGGATCCTCATATGCGATATACTCTCGAGATCAACGCATTAGCCCGCCAGGCTCTGATCAACGCGGATGGCATCATCGAGACTTGCTTCTCTCCCGGTCGGTACAGTATGGAGATGAGTGCGGCCGCATATAAAAGCTTCTGGCGCTTTGACTTGGAAAGCCTTCCAGCAGATCTCATTCGCAGGGGAATGGCCGAACCTGACCCGACAAAACCTCATGGGATAAAGCTAGTAATTGAAGACTACCCGTATGCAGCGGACGGGCTCTTGGTCTGGTCGGCCATCGAGAATTGGGTTCGAACCTACGTGAACCATTACTACCCGGATCCAAGCCTCATTAGCAATGACATCGAGCTTCAAGCTTGGTACCACGAGGCCGTCAATGTTGGCCATGCGGATCTTCGCCACGAAAGCTGGTGGCCCGCATTGACGAATGCCGATGATTTGAGTTGGATTCTCACCATTCTCATTTGGCTTTCGTCTGCCCAACATGCTGCTCTTAACTTTGGACAATATCCGTACGGAGGGTACATTCCTAATCGTCCAACGTTGATGCGAAAATTGATTCCGGAGGAGAACGACCCGGAGTATATCCAATTTATCACCGACCCGGAAAAATATTTCCTATCAGCCTTACCAAGTATCTTACAATCTGCCAAGTTAATTGCTGTGATTGACACACTTTCGACTCACTCTCCCGACGAGGAATATCTAGGCATGCGGCCCCACCTATCGACGTGGACCGGGGACTCAGCTATGATCGAAGCATTTTACGAGTTCTCGTTCGAGATGAGACGGATAGAGAAAGAGATTGATAGAAGGAACAATGATGAGAAGCTCAAGAACAGATGTGGGGCTGGAGTGATTCCATATGAGTTGCTTGCACCAAGCTCTGAACCTGGAGTGACTTGTAGAGGTGTGCCAAATAGTGTCACAATTTAA 2727 48.48 MALGKEMIGSSVLGSSLFVSSTKVFLTGRFGHKVAQERRRVAHLRKSLTSPVAAISEDLVRFPPIAGKPVKFKARAVVTVRNKDKEGIKEAMLKRLDAFTDKIGQNIVLQIFSTEVDPKTKAPKKSNEGVLINWSKKSSVKAERVNYTAEFLLDSYFGEPGAITVSNKHQQEFFLEKITIEGFPGGPVHLPCNSWVQSRKDHPEPRIFFSNKPYLPGETPAGLRVLREKDLSSTRGDGKGVRKLSDRIHDFDQYNDLGNPDKGAEFARPVLGGKEIPYPRRCRTGRIPTDSDVSAESRVEKPLPMYVPRDEQFEESKQDTFALGRLKAVMHSLIPLLKVTMLTRNHDFKGFDEIDSLYSEGLLLELGLQDELLQRLPLPKVVRKIRESSPGFIKYDAPKILSKDKFAWLRDDEFARQAIAGINPVKLERLTVFPPISELDPEVYGPVESALKEEHISGQLNGMTVQQALEEKKLFMIDYHDIYLPFLERMNSIDGRKAYATRTIFFLTPVGTLKPVAIELSLPPTAPISRRKLVVTPPADATGNWQWQLAKAHVCSNDAGAHQLVNHWLRTHATLEPFILSAHRQLSVMHPIYKLLDPHMRYTLEINALARQALINADGIIETCFSPGRYSMEMSAAAYKSFWRFDLESLPADLIRRGMAEPDPTKPHGIKLVIEDYPYAADGLLVWSAIENWVRTYVNHYYPDPSLISNDIELQAWYHEAVNVGHADLRHESWWPALTNADDLSWILTILIWLSSAQHAALNFGQYPYGGYIPNRPTLMRKLIPEENDPEYIQFITDPEKYFLSALPSILQSAKLIAVIDTLSTHSPDEEYLGMRPHLSTWTGDSAMIEAFYEFSFEMRRIEKEIDRRNNDEKLKNRCGAGVIPYELLAPSSEPGVTCRGVPNSVTI 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43238432 43241886 - Bda015554.1 Bda10g00875 14763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00875 908 Pfam PLAT/LH2 domain 130 209 IPR001024 GO:0005515
Bda10g00875 908 Gene3D - 215 316 - -
Bda10g00875 908 PANTHER LIPOXYGENASE 35 907 IPR000907 GO:0016702|GO:0046872
Bda10g00875 908 SMART LH2_4 72 211 IPR001024 GO:0005515
Bda10g00875 908 ProSitePatterns Lipoxygenases iron-binding region signature 2. 589 599 IPR020834 GO:0016702|GO:0046872
Bda10g00875 908 ProSitePatterns Lipoxygenases iron-binding region signature 1. 562 576 IPR020833 GO:0016702|GO:0046872
Bda10g00875 908 MobiDBLite consensus disorder prediction 279 298 - -
Bda10g00875 908 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 213 908 IPR013819 GO:0016702|GO:0046872
Bda10g00875 908 SUPERFAMILY Lipoxigenase 216 908 IPR036226 -
Bda10g00875 908 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 72 214 IPR036392 GO:0005515
Bda10g00875 908 CDD PLAT_LH2 72 211 IPR042057 -
Bda10g00875 908 Gene3D - 317 405 IPR027433 -
Bda10g00875 908 Pfam Lipoxygenase 222 891 IPR013819 GO:0016702|GO:0046872
Bda10g00875 908 Gene3D - 406 539 - -
Bda10g00875 908 PANTHER LIPOXYGENASE 35 907 - -
Bda10g00875 908 Gene3D PLAT/LH2 domain 62 214 - -
Bda10g00875 908 ProSiteProfiles PLAT domain profile. 87 210 IPR001024 GO:0005515
Bda10g00875 908 Gene3D - 541 907 - -
Bda10g00875 908 PRINTS Lipoxygenase signature 582 602 IPR013819 GO:0016702|GO:0046872
Bda10g00875 908 PRINTS Lipoxygenase signature 544 561 IPR013819 GO:0016702|GO:0046872
Bda10g00875 908 PRINTS Lipoxygenase signature 562 579 IPR013819 GO:0016702|GO:0046872
Bda10g00875 908 PRINTS Plant lipoxygenase signature 206 227 IPR001246 GO:0016491
Bda10g00875 908 PRINTS Plant lipoxygenase signature 245 261 IPR001246 GO:0016491
Bda10g00875 908 PRINTS Plant lipoxygenase signature 393 409 IPR001246 GO:0016491
Bda10g00875 908 PRINTS Plant lipoxygenase signature 345 366 IPR001246 GO:0016491
Bda10g00875 908 PRINTS Plant lipoxygenase signature 499 523 IPR001246 GO:0016491
Bda10g00875 908 PRINTS Plant lipoxygenase signature 432 451 IPR001246 GO:0016491
Bda10g00875 908 PRINTS Plant lipoxygenase signature 180 198 IPR001246 GO:0016491
Bda10g00875 908 PRINTS Plant lipoxygenase signature 277 296 IPR001246 GO:0016491
Bda10g00875 908 PRINTS Plant lipoxygenase signature 820 834 IPR001246 GO:0016491
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda04g00935 Bda10g00875 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01262 Bda-Chr7:15426928 Bda10g00875 Bda-Chr10:43238432 0 dispersed
Bda02g00650 Bda-Chr2:47504560 Bda10g00875 Bda-Chr10:43238432 8.66E-71 transposed
Bda10g00968 Bda-Chr10:43954062 Bda10g00875 Bda-Chr10:43238432 0 transposed
Bda10g00875 Bda-Chr10:43238432 Bda04g00935 Bda-Chr4:59107827 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00875 K00454 - jre:109001974 1401.73