Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00889 ATGATGTTTCATCCTCAAGGAGCTGTTAGACGAACTTGTCGACTCCTTGCTGTCACCAGTGATGATTTACTTGAACATAAATTGAAAAAGGATGATGGGGAGGACCATTTAAGATATCCCTTTCCAGAGCTACACTCTTCAGGGCGTTTAGAGGTCCGGAGTTTGGCGAGCCCGAGCAGAGCAGAATTCGGCAAAGTTGTTGAATCATATCAGCCAAATTTAATTTACTTGAGAGGGGTTCTACTCGAGAACGGTGAAATTGGATCTTTGTTGTGGAGAGGTGTTGATTTGTCCACTGTTGAAGTCATATATGATCTCTTTGTCACTACATTCCCGACCACTGTTTATCTTGAACTCCCAAATGGAGAGGAATTGGCAGAGGCACTTCACTCAAAGGGTATCCCGTACGTGATATATTGGAAGAACACATTTTCGCGTTACGCAGCTAGCCATTTCTGTAATGCGTTTCTTTCCGTTTTGCAGAGCTCATCTGCTCATACGTGGGACGTGTTTCAACTTGCACACGCAACCTTTAGGCTGTACTGTTCTCAAAATAATAATCTCCATCTTAGGAATGAACATGAAGTTAGTGATGATTTTTGCCCACAACTTCTCGGGGAGCACTTAAAAATTAATATTGAACCTTCAGAGTCGGATATGGCCAAAGACGAAGAAGAAGATTCTTTGGGAACTCTCCCTGCCGTAAATATATATGCTGATGATGTGAGCATGAAGTTTCTTGTCTGTGGAGAACTGTGCAAGTTGGATGCATACTTACTTGGAGCTTTAGAGGATGGACTTAACGCCCTTCTGAACATCGAAATTAGAGGTAGCAAATTGCAAGGCAAGTTCAGTGCTCCTCCACCGCCTCTTCAGGCAGAAATATTTTCTCCCGGAGTTGTGACAATGCGATGTGACATATCGACCAGTACTTATGCTCATATCGCACTTTTGTTATCGGGTAGTGCACAAACATGTTTTGACGATCAGCTTTTGGAAAATCACATAAAAAAGGAAATTATTGAAAACAGCCAACCAGTTCATGCGATTACTTACAGTGAGGAGAGCAAAGTTCCACTATCGGAGCCTCGAAAATCTGCATCAGTTGCTTGTGGGGCAGCGGTATTCGAAGTTGGTATGAAGGTCCCTAACTGGGCTTCGCAGATTTTGAGGCAGCTAGCACCCGATATTTCCTATCGTAGCTTAGTCGCACTGGGTATTGCCTGCATACAGGGAGTACCCATCGCTTCGTTCGAGAAAGATGATGCTGATCGACTTCTTTACTTCCGTCCAAAGCATGGACTAGACAAATTTGCTAATAATTCGATTCTTTATACCTCTCCAAGTTGGTTGACGCCGCCTGCCCCAACCCGAAAGAGGTCTAAGCCAGGAATAAATGGTGGTTTTCTTAGTAGCCTTGCCCGTCCAAACTTGTCATCCGCTAGAATTGACGAACAAAACAAGGAGATGGCACTGATACATGGCTTCAGCACATCCGTACTGCCGCCTCGGCAAAGGTTGAAAGTCCCGGCAATGAGGCCGATTCCTCGCCTTCATCGCCATAAAATGACACTTTTATCTGGACCGGCTGAGGCAAATGGCCATGATAGAGGGCAAATTAAGCCTAAAATAACGGTTGTTACTCCTCCGAAGCATGCTGTCGTTAGATCAACTTCTGGACCACAGCAAAAATTATGTTCGAGCTCGTCTCTGTCTAAGCAAATTATGTCCCTAAATCCACTGCCCTTGAAGAAGCATGGTTGTGGCAGAAACCCAATACAGGATTGCTCTGAGGAGGATTTTCTGAGGGATGTACTGCAGTTTATGGTTGAACGTGGACACACCCGATTCGTTCCTCCCGGTGGGCTCAGTGAGTTTCCAGATGCCATACTCAACGGGAAGCGTCTCGACCTTTACAACTTGTATAAGGAGGTGGTTTCCAGAGGCGGATTTCGTGTTGGGAATGGTATCAACTGGAAAGGACAGATCTTTTCGAAAATGAGAAATTACACGATGACCAATAAAATGACAGTAAGGCCCTTAACGACATTTTTCTTCGAACTTATGAGATCGAGTGGAATCTTATGTTATCTGGACTTGCAGGGGGCTGGGAATACGCTGAAAAGGCACTACGAAACATACCTTCTCGAATACGAACTGGCCCACGATGATGTTGACGGGGAATGCTGCCTATTGTGTCACAGTAATGCCGCCGGAGATTGGGTGAATTGCGGGATCTGTGGCGAGTGGGCTCACTTTGGCTGTGATCGAAGGCAAGGACTCGGTGCATTTAAGGATTATGCAAAAACAGCAGGTCTGGACTACATATGTCCACACTGCAGCAATACGAGTTTTAAGAGGAGGCCGCAAAATGTTCGAAACGGGTTTTCCCAAAGCCTACTCGCCCCGCAGCCTTTGGATGACTGA 2427 45.45 MMFHPQGAVRRTCRLLAVTSDDLLEHKLKKDDGEDHLRYPFPELHSSGRLEVRSLASPSRAEFGKVVESYQPNLIYLRGVLLENGEIGSLLWRGVDLSTVEVIYDLFVTTFPTTVYLELPNGEELAEALHSKGIPYVIYWKNTFSRYAASHFCNAFLSVLQSSSAHTWDVFQLAHATFRLYCSQNNNLHLRNEHEVSDDFCPQLLGEHLKINIEPSESDMAKDEEEDSLGTLPAVNIYADDVSMKFLVCGELCKLDAYLLGALEDGLNALLNIEIRGSKLQGKFSAPPPPLQAEIFSPGVVTMRCDISTSTYAHIALLLSGSAQTCFDDQLLENHIKKEIIENSQPVHAITYSEESKVPLSEPRKSASVACGAAVFEVGMKVPNWASQILRQLAPDISYRSLVALGIACIQGVPIASFEKDDADRLLYFRPKHGLDKFANNSILYTSPSWLTPPAPTRKRSKPGINGGFLSSLARPNLSSARIDEQNKEMALIHGFSTSVLPPRQRLKVPAMRPIPRLHRHKMTLLSGPAEANGHDRGQIKPKITVVTPPKHAVVRSTSGPQQKLCSSSSLSKQIMSLNPLPLKKHGCGRNPIQDCSEEDFLRDVLQFMVERGHTRFVPPGGLSEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNKMTVRPLTTFFFELMRSSGILCYLDLQGAGNTLKRHYETYLLEYELAHDDVDGECCLLCHSNAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTAGLDYICPHCSNTSFKRRPQNVRNGFSQSLLAPQPLDD 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43343381 43347853 - Bda015569.1 Bda10g00889 14777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00889 808 SUPERFAMILY FYVE/PHD zinc finger 719 787 IPR011011 -
Bda10g00889 808 SMART bright_3 596 724 IPR001606 GO:0003677
Bda10g00889 808 SMART ARID_2 592 719 - -
Bda10g00889 808 ProSiteProfiles ARID domain profile. 595 723 IPR001606 GO:0003677
Bda10g00889 808 Gene3D - 591 722 IPR036431 GO:0003677
Bda10g00889 808 SUPERFAMILY ARID-like 595 734 IPR036431 GO:0003677
Bda10g00889 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 723 786 IPR013083 -
Bda10g00889 808 Pfam ARID/BRIGHT DNA binding domain 598 719 IPR001606 GO:0003677
Bda10g00889 808 CDD PHD_ARID4_like 729 780 - -
Bda10g00889 808 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 2 677 IPR042293 -
Bda10g00889 808 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 701 796 IPR042293 -
Bda10g00889 808 CDD ARID 597 719 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda05g00623 Bda10g00889 CCT
Bda05g00623 Bda10g00889 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00889 Bda-Chr10:43343381 Bda10g00892 Bda-Chr10:43404446 0 proximal
Bda10g00889 Bda-Chr10:43343381 Bda05g00623 Bda-Chr5:54288403 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16530 PF01388 ARID 3.90E-12 CL0123 Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00889 - - jre:109004980 1080.86