Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00889 ATGATGTTTCATCCTCAAGGAGCTGTTAGACGAACTTGTCGACTCCTTGCTGTCACCAGTGATGATTTACTTGAACATAAATTGAAAAAGGATGATGGGGAGGACCATTTAAGATATCCCTTTCCAGAGCTACACTCTTCAGGGCGTTTAGAGGTCCGGAGTTTGGCGAGCCCGAGCAGAGCAGAATTCGGCAAAGTTGTTGAATCATATCAGCCAAATTTAATTTACTTGAGAGGGGTTCTACTCGAGAACGGTGAAATTGGATCTTTGTTGTGGAGAGGTGTTGATTTGTCCACTGTTGAAGTCATATATGATCTCTTTGTCACTACATTCCCGACCACTGTTTATCTTGAACTCCCAAATGGAGAGGAATTGGCAGAGGCACTTCACTCAAAGGGTATCCCGTACGTGATATATTGGAAGAACACATTTTCGCGTTACGCAGCTAGCCATTTCTGTAATGCGTTTCTTTCCGTTTTGCAGAGCTCATCTGCTCATACGTGGGACGTGTTTCAACTTGCACACGCAACCTTTAGGCTGTACTGTTCTCAAAATAATAATCTCCATCTTAGGAATGAACATGAAGTTAGTGATGATTTTTGCCCACAACTTCTCGGGGAGCACTTAAAAATTAATATTGAACCTTCAGAGTCGGATATGGCCAAAGACGAAGAAGAAGATTCTTTGGGAACTCTCCCTGCCGTAAATATATATGCTGATGATGTGAGCATGAAGTTTCTTGTCTGTGGAGAACTGTGCAAGTTGGATGCATACTTACTTGGAGCTTTAGAGGATGGACTTAACGCCCTTCTGAACATCGAAATTAGAGGTAGCAAATTGCAAGGCAAGTTCAGTGCTCCTCCACCGCCTCTTCAGGCAGAAATATTTTCTCCCGGAGTTGTGACAATGCGATGTGACATATCGACCAGTACTTATGCTCATATCGCACTTTTGTTATCGGGTAGTGCACAAACATGTTTTGACGATCAGCTTTTGGAAAATCACATAAAAAAGGAAATTATTGAAAACAGCCAACCAGTTCATGCGATTACTTACAGTGAGGAGAGCAAAGTTCCACTATCGGAGCCTCGAAAATCTGCATCAGTTGCTTGTGGGGCAGCGGTATTCGAAGTTGGTATGAAGGTCCCTAACTGGGCTTCGCAGATTTTGAGGCAGCTAGCACCCGATATTTCCTATCGTAGCTTAGTCGCACTGGGTATTGCCTGCATACAGGGAGTACCCATCGCTTCGTTCGAGAAAGATGATGCTGATCGACTTCTTTACTTCCGTCCAAAGCATGGACTAGACAAATTTGCTAATAATTCGATTCTTTATACCTCTCCAAGTTGGTTGACGCCGCCTGCCCCAACCCGAAAGAGGTCTAAGCCAGGAATAAATGGTGGTTTTCTTAGTAGCCTTGCCCGTCCAAACTTGTCATCCGCTAGAATTGACGAACAAAACAAGGAGATGGCACTGATACATGGCTTCAGCACATCCGTACTGCCGCCTCGGCAAAGGTTGAAAGTCCCGGCAATGAGGCCGATTCCTCGCCTTCATCGCCATAAAATGACACTTTTATCTGGACCGGCTGAGGCAAATGGCCATGATAGAGGGCAAATTAAGCCTAAAATAACGGTTGTTACTCCTCCGAAGCATGCTGTCGTTAGATCAACTTCTGGACCACAGCAAAAATTATGTTCGAGCTCGTCTCTGTCTAAGCAAATTATGTCCCTAAATCCACTGCCCTTGAAGAAGCATGGTTGTGGCAGAAACCCAATACAGGATTGCTCTGAGGAGGATTTTCTGAGGGATGTACTGCAGTTTATGGTTGAACGTGGACACACCCGATTCGTTCCTCCCGGTGGGCTCAGTGAGTTTCCAGATGCCATACTCAACGGGAAGCGTCTCGACCTTTACAACTTGTATAAGGAGGTGGTTTCCAGAGGCGGATTTCGTGTTGGGAATGGTATCAACTGGAAAGGACAGATCTTTTCGAAAATGAGAAATTACACGATGACCAATAAAATGACAGTAAGGCCCTTAACGACATTTTTCTTCGAACTTATGAGATCGAGTGGAATCTTATGTTATCTGGACTTGCAGGGGGCTGGGAATACGCTGAAAAGGCACTACGAAACATACCTTCTCGAATACGAACTGGCCCACGATGATGTTGACGGGGAATGCTGCCTATTGTGTCACAGTAATGCCGCCGGAGATTGGGTGAATTGCGGGATCTGTGGCGAGTGGGCTCACTTTGGCTGTGATCGAAGGCAAGGACTCGGTGCATTTAAGGATTATGCAAAAACAGCAGGTCTGGACTACATATGTCCACACTGCAGCAATACGAGTTTTAAGAGGAGGCCGCAAAATGTTCGAAACGGGTTTTCCCAAAGCCTACTCGCCCCGCAGCCTTTGGATGACTGA 2427 45.45 MMFHPQGAVRRTCRLLAVTSDDLLEHKLKKDDGEDHLRYPFPELHSSGRLEVRSLASPSRAEFGKVVESYQPNLIYLRGVLLENGEIGSLLWRGVDLSTVEVIYDLFVTTFPTTVYLELPNGEELAEALHSKGIPYVIYWKNTFSRYAASHFCNAFLSVLQSSSAHTWDVFQLAHATFRLYCSQNNNLHLRNEHEVSDDFCPQLLGEHLKINIEPSESDMAKDEEEDSLGTLPAVNIYADDVSMKFLVCGELCKLDAYLLGALEDGLNALLNIEIRGSKLQGKFSAPPPPLQAEIFSPGVVTMRCDISTSTYAHIALLLSGSAQTCFDDQLLENHIKKEIIENSQPVHAITYSEESKVPLSEPRKSASVACGAAVFEVGMKVPNWASQILRQLAPDISYRSLVALGIACIQGVPIASFEKDDADRLLYFRPKHGLDKFANNSILYTSPSWLTPPAPTRKRSKPGINGGFLSSLARPNLSSARIDEQNKEMALIHGFSTSVLPPRQRLKVPAMRPIPRLHRHKMTLLSGPAEANGHDRGQIKPKITVVTPPKHAVVRSTSGPQQKLCSSSSLSKQIMSLNPLPLKKHGCGRNPIQDCSEEDFLRDVLQFMVERGHTRFVPPGGLSEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNKMTVRPLTTFFFELMRSSGILCYLDLQGAGNTLKRHYETYLLEYELAHDDVDGECCLLCHSNAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTAGLDYICPHCSNTSFKRRPQNVRNGFSQSLLAPQPLDD 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43343381 43347853 - Bda015569.1 Bda10g00889 14777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00889 808 SUPERFAMILY FYVE/PHD zinc finger 719 787 IPR011011 -
Bda10g00889 808 SMART bright_3 596 724 IPR001606 GO:0003677
Bda10g00889 808 SMART ARID_2 592 719 - -
Bda10g00889 808 ProSiteProfiles ARID domain profile. 595 723 IPR001606 GO:0003677
Bda10g00889 808 Gene3D - 591 722 IPR036431 GO:0003677
Bda10g00889 808 SUPERFAMILY ARID-like 595 734 IPR036431 GO:0003677
Bda10g00889 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 723 786 IPR013083 -
Bda10g00889 808 Pfam ARID/BRIGHT DNA binding domain 598 719 IPR001606 GO:0003677
Bda10g00889 808 CDD PHD_ARID4_like 729 780 - -
Bda10g00889 808 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 2 677 IPR042293 -
Bda10g00889 808 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 701 796 IPR042293 -
Bda10g00889 808 CDD ARID 597 719 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00889 - - - jre:109004980 1080.86
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00623 Bda10g00889 CCT
Bda05g00623 Bda10g00889 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00889 Bda-Chr10:43343381 Bda10g00892 Bda-Chr10:43404446 0 proximal
Bda10g00889 Bda-Chr10:43343381 Bda05g00623 Bda-Chr5:54288403 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g26 . Blo06g00765 . Bda10g00889 . Bpe10g00717 Bma10g00669 . . Cmo17g00636 . . . Car14g01069 . Cpe12g00555 . Bhi01g02835 . . . . . . . . . . . . . . . Cone7ag1258 . Lsi02g02861 Csa07g02313 . Cme01g02766 Blo07g00805 . Bda05g00623 . Bpe03g00693 . . . Sed04g2378 Cmo01g00019 . . Cma17g00656 . Car17g00618 . . Bhi09g00271 Tan06g0071 Cmetu01g1064 . Hepe03g1390 . . Cla09g00122 Cam09g0131 Cec09g0134 Cco09g0135 Clacu09g0138 . Cre09g0123 . Csa03g02792 Chy01g02133 Cme04g01382
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda01g01577 . 7 291 ARID Transcription Factor Family AT1G20910 62.1 3.5e-92 335.5
Bda04g00200 . 41 352 ARID Transcription Factor Family AT1G20910 55.0 1.4e-85 313.5
Bda10g00275 . 3 154 ARID Transcription Factor Family AT1G20910 57.2 1.3e-43 174.1
Bda01g00466 . 16 338 ARID Transcription Factor Family AT1G76110 60.4 1.3e-103 373.2
Bda01g01577 . 5 321 ARID Transcription Factor Family AT1G76510 67.2 2.5e-115 412.5
Bda04g00200 . 49 382 ARID Transcription Factor Family AT1G76510 58.8 3.4e-104 375.6
Bda10g00275 . 3 184 ARID Transcription Factor Family AT1G76510 65.9 3.8e-63 239.2
Bda12g00990 . 42 334 ARID Transcription Factor Family AT3G13350 52.7 7.0e-83 304.3
Bda05g00623 CCT,ECH 1 769 ARID Transcription Factor Family AT3G43240 56.4 1.9e-248 855.5
Bda10g00892 . 2 783 ARID Transcription Factor Family AT3G43240 55.6 1.0e-246 849.7
Bda10g00889 CCT,ECH 2 803 ARID Transcription Factor Family AT3G43240 54.5 2.9e-244 841.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16530 PF01388 ARID 3.90E-12 CL0123 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g00889 Bda_Chr10 FPKM 37.840466 37.193104 28.712046 25.396057 19.759657 22.043242 22.088835 32.445259 37.441067