Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00892 ATGATGTTTCATCCTCAAGGAGCTGTTAGACGAACTTGTCGACTCCTTGCTGTCACCAGTGATGATTTACTTGAACATAAATTGAAAAAGGATGATGGGGAGGAGCATTTAAGATATCCCTTTCCAGAGCTACACTCTTCAGGGCGTTTAGAGGTCCGGAGTTTGGCGAGCCCGAGCAGAGCAGAATTCGGCAAAGTTGTTGAATCATATCAGCCAAATTTAATTTACTTGAGAGGGGTTCTACTCGAGAACGATGAAATTGGATCTTTGTTGTGGAGAGGTGTTGATTTGTCCACTGTTGAAGTAATATATGATCTCTTTGTCACTACATTCCCGACCACTGTTTATCTTGAACTCCCAAATGGAGAGGAATTGGCAGAGGCACTTCACTCAAAGGGTATCCCGTACGTGATATATTGGAAGAACACATTTTCGCGTTGCGCAGCTAGCCATTTCTGTAATGCGTTTCTTTCCGTTTTGCAGAGCTCATCTGCTCATACGTGGGACGTGTTTCAACTTGCACACGCATCCTTTAGGCTGTACTGCTCTCAAAATAATAATCTCCATCTTAGGAATGAACATGAAGTTGGTGATGATTTTTGCCCACAACTTCTCGGGGAGCACTTAAAAATTAATATTGAACCTTCAGAGTCGGATATGGCCAAAGACGAAGAAGAAGATTCTTTGGGAACTCTCCCTGCCGTAAATATATATGCTGATGATGTGAGCATGAAGTTTCTTGTCTGTGGAGAACTGTGCAAGTTGGATGCATACTTACTTGGAGCTTTAGAGGATGGACTTAACGCCCTTTTGAACATCGAAATTCGAGGTAGCAAATTGCATGGCAAGTTCAGGTATATTTACTATGCTCCTCCACCGCCTCTTCAGGCAGAAATATTTTCTCCCGGAGTTGTGACAATGCGATGTGACATATCGACCAGTACTTATGCTCATATCGCACTTTTGTTATCGGGTAGTGCACAAACATGTTTTGATGATCAGCTTTTGGAAAATCACATAAAAAAGGAAATTATTGAAAACAGCCAACCAGTTCATGCGATTACTTACAGTGAGGAGAGCAAAGTTCCACTATCGGAGCCTCGAAAATCTGCATCAGTTGCTTGTGGGGCAGCGGTATTCGAAGTTGGTATGAAGGTCCCTAACTGGGCTTCGCAGATTTTGAGGCAGCTAGCACCGGATATTTCCTATCGTAGCTTAGTAGCACTGGGTATTGCCTGCATACAGGGAGTACCCATCGCTTCGTTCGAGAGAGATGATGCTGATCGACTTCTTTACTTCCTTCCAAAGCATGGACAAGACAAATTTGCTAATAATTCGATTCTTTATACCTCTCCAAGTTGGTTGACGCCGCCTGCCCCAACCCGAAAGAGGTCTAAGCCAGGAATAAATGGTGGTTTTCTTAGTAGCCTTGCCCGTCCAAACTTGTCATCCGCTAGAATTGACGAACAAAACAAGGAGATGGCACTGATGCATGGCTTCAGCACATCCTTACTGCCGCCTCGGCAAAGGTTGAAAGTCCCGGCAATGAGGCCGATTCCTCGCCTTCATCGCCATAAAATGACACTTTTATCTGGACCGGCTGAGGCAAATGGCCATGATAGAGGGCAAATTAAGCCTAAAATAACGGTTGTTACTCCTCCGAAGCATGCTGTCGTTAGATCAACTTCTGGACCACAGCAAAAATTATGTTCGAGCTCGTCTCTGTCTAAGCAAATTATGTCCCTCAATCCACTGCCCTTGAAGAAGCATGGCTGTGGCAGAAACCCAATACAGGATTGCTCTGAGGAGGATTTTCTGAAGGATGTACTGCAGTTTATGGTTGAACGAGGACACACCCGATTCGTTCCTCCCGGTGGGCTCAGTGAGTTTCCAGATGCCATACTCAACGGGAAGCGTCTCGACCTTTACAACTTGTATAAGGAGGTGGTTTCCAGAGGCGGATTTCGTGTTGGGAATGGTATCAACTGGAAAGGACAGATCTTTTCGAAAATGAGAAATTACACTATGACCAATAAAATGACAGGGGCTGGGAATACGCTGAAAAGGCACTACGAAACATACCTTCTCGAATACGAACTGGCCCACGATGATGTTGACGGGGAATGCTGCCTATTGTGTCACAGTAATGCCGCCGGAGATTGGGTGAATTGCGGGATCTGTGGTGAGTGGGCTCACTTTGGCTGTGATCGAAGGCAAGGACTCGGTGCATTTAAGGATTATGCAAAAACAGCAGGTCTGGACTACATATGTCCACACTGCAGCAATACGAGTTTTAAGAGGAGACCGCAAAATGTTCGAAACGGGTTTTCCCAAAGCATACTTGCCCCGCAGCCTTTGGATGACTGA 2367 45.25 MMFHPQGAVRRTCRLLAVTSDDLLEHKLKKDDGEEHLRYPFPELHSSGRLEVRSLASPSRAEFGKVVESYQPNLIYLRGVLLENDEIGSLLWRGVDLSTVEVIYDLFVTTFPTTVYLELPNGEELAEALHSKGIPYVIYWKNTFSRCAASHFCNAFLSVLQSSSAHTWDVFQLAHASFRLYCSQNNNLHLRNEHEVGDDFCPQLLGEHLKINIEPSESDMAKDEEEDSLGTLPAVNIYADDVSMKFLVCGELCKLDAYLLGALEDGLNALLNIEIRGSKLHGKFRYIYYAPPPPLQAEIFSPGVVTMRCDISTSTYAHIALLLSGSAQTCFDDQLLENHIKKEIIENSQPVHAITYSEESKVPLSEPRKSASVACGAAVFEVGMKVPNWASQILRQLAPDISYRSLVALGIACIQGVPIASFERDDADRLLYFLPKHGQDKFANNSILYTSPSWLTPPAPTRKRSKPGINGGFLSSLARPNLSSARIDEQNKEMALMHGFSTSLLPPRQRLKVPAMRPIPRLHRHKMTLLSGPAEANGHDRGQIKPKITVVTPPKHAVVRSTSGPQQKLCSSSSLSKQIMSLNPLPLKKHGCGRNPIQDCSEEDFLKDVLQFMVERGHTRFVPPGGLSEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNKMTGAGNTLKRHYETYLLEYELAHDDVDGECCLLCHSNAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTAGLDYICPHCSNTSFKRRPQNVRNGFSQSILAPQPLDD 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43404446 43409001 - Bda015573.1 Bda10g00892 14780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00892 788 SMART bright_3 600 704 IPR001606 GO:0003677
Bda10g00892 788 ProSiteProfiles ARID domain profile. 599 703 IPR001606 GO:0003677
Bda10g00892 788 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 766 IPR013083 -
Bda10g00892 788 CDD ARID 601 699 - -
Bda10g00892 788 Gene3D - 595 702 IPR036431 GO:0003677
Bda10g00892 788 SUPERFAMILY ARID-like 599 714 IPR036431 GO:0003677
Bda10g00892 788 SMART ARID_2 596 699 - -
Bda10g00892 788 SUPERFAMILY FYVE/PHD zinc finger 699 767 IPR011011 -
Bda10g00892 788 CDD PHD_ARID4_like 709 760 - -
Bda10g00892 788 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 2 776 IPR042293 -
Bda10g00892 788 Pfam ARID/BRIGHT DNA binding domain 602 699 IPR001606 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00892 - - - jre:109004980 1092.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00623 Bda-Chr5:54288403 Bda10g00892 Bda-Chr10:43404446 0 dispersed
Bda10g00889 Bda-Chr10:43343381 Bda10g00892 Bda-Chr10:43404446 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda01g01577 . 7 291 ARID Transcription Factor Family AT1G20910 62.1 3.5e-92 335.5
Bda04g00200 . 41 352 ARID Transcription Factor Family AT1G20910 55.0 1.4e-85 313.5
Bda10g00275 . 3 154 ARID Transcription Factor Family AT1G20910 57.2 1.3e-43 174.1
Bda01g00466 . 16 338 ARID Transcription Factor Family AT1G76110 60.4 1.3e-103 373.2
Bda01g01577 . 5 321 ARID Transcription Factor Family AT1G76510 67.2 2.5e-115 412.5
Bda04g00200 . 49 382 ARID Transcription Factor Family AT1G76510 58.8 3.4e-104 375.6
Bda10g00275 . 3 184 ARID Transcription Factor Family AT1G76510 65.9 3.8e-63 239.2
Bda12g00990 . 42 334 ARID Transcription Factor Family AT3G13350 52.7 7.0e-83 304.3
Bda05g00623 CCT,ECH 1 769 ARID Transcription Factor Family AT3G43240 56.4 1.9e-248 855.5
Bda10g00892 . 2 783 ARID Transcription Factor Family AT3G43240 55.6 1.0e-246 849.7
Bda10g00889 CCT,ECH 2 803 ARID Transcription Factor Family AT3G43240 54.5 2.9e-244 841.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16531 PF01388 ARID 1.90E-15 CL0123 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g00892 Bda_Chr10 FPKM 0.0 0.0 0.0 17.011799 0.0 0.0 0.0 0.0 0.0