Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00892 ATGATGTTTCATCCTCAAGGAGCTGTTAGACGAACTTGTCGACTCCTTGCTGTCACCAGTGATGATTTACTTGAACATAAATTGAAAAAGGATGATGGGGAGGAGCATTTAAGATATCCCTTTCCAGAGCTACACTCTTCAGGGCGTTTAGAGGTCCGGAGTTTGGCGAGCCCGAGCAGAGCAGAATTCGGCAAAGTTGTTGAATCATATCAGCCAAATTTAATTTACTTGAGAGGGGTTCTACTCGAGAACGATGAAATTGGATCTTTGTTGTGGAGAGGTGTTGATTTGTCCACTGTTGAAGTAATATATGATCTCTTTGTCACTACATTCCCGACCACTGTTTATCTTGAACTCCCAAATGGAGAGGAATTGGCAGAGGCACTTCACTCAAAGGGTATCCCGTACGTGATATATTGGAAGAACACATTTTCGCGTTGCGCAGCTAGCCATTTCTGTAATGCGTTTCTTTCCGTTTTGCAGAGCTCATCTGCTCATACGTGGGACGTGTTTCAACTTGCACACGCATCCTTTAGGCTGTACTGCTCTCAAAATAATAATCTCCATCTTAGGAATGAACATGAAGTTGGTGATGATTTTTGCCCACAACTTCTCGGGGAGCACTTAAAAATTAATATTGAACCTTCAGAGTCGGATATGGCCAAAGACGAAGAAGAAGATTCTTTGGGAACTCTCCCTGCCGTAAATATATATGCTGATGATGTGAGCATGAAGTTTCTTGTCTGTGGAGAACTGTGCAAGTTGGATGCATACTTACTTGGAGCTTTAGAGGATGGACTTAACGCCCTTTTGAACATCGAAATTCGAGGTAGCAAATTGCATGGCAAGTTCAGGTATATTTACTATGCTCCTCCACCGCCTCTTCAGGCAGAAATATTTTCTCCCGGAGTTGTGACAATGCGATGTGACATATCGACCAGTACTTATGCTCATATCGCACTTTTGTTATCGGGTAGTGCACAAACATGTTTTGATGATCAGCTTTTGGAAAATCACATAAAAAAGGAAATTATTGAAAACAGCCAACCAGTTCATGCGATTACTTACAGTGAGGAGAGCAAAGTTCCACTATCGGAGCCTCGAAAATCTGCATCAGTTGCTTGTGGGGCAGCGGTATTCGAAGTTGGTATGAAGGTCCCTAACTGGGCTTCGCAGATTTTGAGGCAGCTAGCACCGGATATTTCCTATCGTAGCTTAGTAGCACTGGGTATTGCCTGCATACAGGGAGTACCCATCGCTTCGTTCGAGAGAGATGATGCTGATCGACTTCTTTACTTCCTTCCAAAGCATGGACAAGACAAATTTGCTAATAATTCGATTCTTTATACCTCTCCAAGTTGGTTGACGCCGCCTGCCCCAACCCGAAAGAGGTCTAAGCCAGGAATAAATGGTGGTTTTCTTAGTAGCCTTGCCCGTCCAAACTTGTCATCCGCTAGAATTGACGAACAAAACAAGGAGATGGCACTGATGCATGGCTTCAGCACATCCTTACTGCCGCCTCGGCAAAGGTTGAAAGTCCCGGCAATGAGGCCGATTCCTCGCCTTCATCGCCATAAAATGACACTTTTATCTGGACCGGCTGAGGCAAATGGCCATGATAGAGGGCAAATTAAGCCTAAAATAACGGTTGTTACTCCTCCGAAGCATGCTGTCGTTAGATCAACTTCTGGACCACAGCAAAAATTATGTTCGAGCTCGTCTCTGTCTAAGCAAATTATGTCCCTCAATCCACTGCCCTTGAAGAAGCATGGCTGTGGCAGAAACCCAATACAGGATTGCTCTGAGGAGGATTTTCTGAAGGATGTACTGCAGTTTATGGTTGAACGAGGACACACCCGATTCGTTCCTCCCGGTGGGCTCAGTGAGTTTCCAGATGCCATACTCAACGGGAAGCGTCTCGACCTTTACAACTTGTATAAGGAGGTGGTTTCCAGAGGCGGATTTCGTGTTGGGAATGGTATCAACTGGAAAGGACAGATCTTTTCGAAAATGAGAAATTACACTATGACCAATAAAATGACAGGGGCTGGGAATACGCTGAAAAGGCACTACGAAACATACCTTCTCGAATACGAACTGGCCCACGATGATGTTGACGGGGAATGCTGCCTATTGTGTCACAGTAATGCCGCCGGAGATTGGGTGAATTGCGGGATCTGTGGTGAGTGGGCTCACTTTGGCTGTGATCGAAGGCAAGGACTCGGTGCATTTAAGGATTATGCAAAAACAGCAGGTCTGGACTACATATGTCCACACTGCAGCAATACGAGTTTTAAGAGGAGACCGCAAAATGTTCGAAACGGGTTTTCCCAAAGCATACTTGCCCCGCAGCCTTTGGATGACTGA 2367 45.25 MMFHPQGAVRRTCRLLAVTSDDLLEHKLKKDDGEEHLRYPFPELHSSGRLEVRSLASPSRAEFGKVVESYQPNLIYLRGVLLENDEIGSLLWRGVDLSTVEVIYDLFVTTFPTTVYLELPNGEELAEALHSKGIPYVIYWKNTFSRCAASHFCNAFLSVLQSSSAHTWDVFQLAHASFRLYCSQNNNLHLRNEHEVGDDFCPQLLGEHLKINIEPSESDMAKDEEEDSLGTLPAVNIYADDVSMKFLVCGELCKLDAYLLGALEDGLNALLNIEIRGSKLHGKFRYIYYAPPPPLQAEIFSPGVVTMRCDISTSTYAHIALLLSGSAQTCFDDQLLENHIKKEIIENSQPVHAITYSEESKVPLSEPRKSASVACGAAVFEVGMKVPNWASQILRQLAPDISYRSLVALGIACIQGVPIASFERDDADRLLYFLPKHGQDKFANNSILYTSPSWLTPPAPTRKRSKPGINGGFLSSLARPNLSSARIDEQNKEMALMHGFSTSLLPPRQRLKVPAMRPIPRLHRHKMTLLSGPAEANGHDRGQIKPKITVVTPPKHAVVRSTSGPQQKLCSSSSLSKQIMSLNPLPLKKHGCGRNPIQDCSEEDFLKDVLQFMVERGHTRFVPPGGLSEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNKMTGAGNTLKRHYETYLLEYELAHDDVDGECCLLCHSNAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTAGLDYICPHCSNTSFKRRPQNVRNGFSQSILAPQPLDD 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43404446 43409001 - Bda015573.1 Bda10g00892 14780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00892 788 SMART bright_3 600 704 IPR001606 GO:0003677
Bda10g00892 788 ProSiteProfiles ARID domain profile. 599 703 IPR001606 GO:0003677
Bda10g00892 788 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 766 IPR013083 -
Bda10g00892 788 CDD ARID 601 699 - -
Bda10g00892 788 Gene3D - 595 702 IPR036431 GO:0003677
Bda10g00892 788 SUPERFAMILY ARID-like 599 714 IPR036431 GO:0003677
Bda10g00892 788 SMART ARID_2 596 699 - -
Bda10g00892 788 SUPERFAMILY FYVE/PHD zinc finger 699 767 IPR011011 -
Bda10g00892 788 CDD PHD_ARID4_like 709 760 - -
Bda10g00892 788 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 2 776 IPR042293 -
Bda10g00892 788 Pfam ARID/BRIGHT DNA binding domain 602 699 IPR001606 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00623 Bda-Chr5:54288403 Bda10g00892 Bda-Chr10:43404446 0 dispersed
Bda10g00889 Bda-Chr10:43343381 Bda10g00892 Bda-Chr10:43404446 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16531 PF01388 ARID 1.90E-15 CL0123 Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00892 - - jre:109004980 1092.41