Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00910 ATGCCGTCCGTCTACGGAGCTCGTTTGACTACCTTTGAAGATTCTGACAAGGAAAAGGAGTATGGATACGTCCGCAAGGTGTCAGGACCTGTTGTGGTTGCCGATGGTATGGCTGGTGCTGCCATGTATGAATTGGTTCGGGTTGGCCACGATAATTTAATTGGTGAAATCATTCGATTAGAAGGAGATTCTGCTACAATCCAAGTTTATGAGGAAACAGCTGGACTGATGGTGAATGACCCAGTTTTGAGAACACATAAGCCTTTGTCGGTGGAGTTGGGACCTGGAATACTAGGAAATATATTTGATGGAATTCAGAGGCCTTTGAAAACTATTGCAAAAAGATCCGGAGATGTATACATTCCTCGTGGTGTTTCAGTCCCAGCACTTGACAAAGACATACTATGGGATTTTCAACCAAAAAAACTTGGTAGTGAAGGTGATCTATTAACAGGTGGAGACTTGTATGCTACTGTCTTTGAGAATAGTTTAATGCAGCACCATATTGCGCTGCCTCCTAACTCTATGGGAAAAATTACTTACATTGCACCACCTGGTCAATATTCATTGAAGGATACTGTGTTAGAGCTGGAGTTTCAAGGTGTTAAAAAGCAATTTACCATGCTTCAGACATGGCCTGTACGTACACCTAGGCCAGTTGCATCAAAGCTTGCAGCTGATACCCCTCTGCTTACTGGTCAGCGTGTTCTTGATGCTCTCTTTCCGTCTGTTCTTGGTGGAACTTGTGCCATACCTGGAGCATTTGGTTGTGGAAAAACTGTCATTAGTCAAGCTCTTTCTAAGTACTCAAATTCCGACACTGTTGTTTATGTTGGTTGTGGGGAGAGAGGAAATGAAATGGCAGAGGTTCTTATGGATTTTCCGCAACTGACAATGACATTACCTGATGGCCGTGAAGAATCTGTCATGAAACGTACTACACTTGTGGCAAACACTTCTAACATGCCTGTGGCTGCCCGTGAGGCTTCAATATATACTGGAATTACTATTGCTGAATACTTCAGAGATATGGGGTACAATGTCAGTATGATGGCAGATTCGACTTCTCGCTGGGCAGAAGCATTGCGTGAGATATCTGGACGACTGGCAGAAATGCCTGCAGATAGTGGCTACCCAGCTTATCTTGCGGCACGTTTAGCTTCTTTTTATGAGCGAGCGGGCAAAGTAAAATGTCTGGGAGGACCAGAACGTAATGGCAGTGTCACAATTGTTGGTGCTGTTTCACCTCCGGGAGGAGATTTTTCTGATCCTGTGACATCTGCAACCCTCAGCATTGTACAGGTTTTCTGGGGACTTGACAAAAAGCTTGCTCAGAGAAAGCATTTCCCATCTGTTAACTGGCTTATTTCCTACTCAAAATACTCAACTGCATTGGAATCCTTTTATGAGCAGTTTGACCAAGATTTTATTAGCATTAGGACGAAGGCCCGTGAGGTGCTACAAAGAGAAGATGACCTTAATGAGATTGTTCAACTTGTAGGAAAAGATGCCTTAGCTGAAGGAGATAAAATTACACTCGAGACTGCAAAACTTTTGAGAGAAGACTATCTAGCACAGAATGCATTTACTCCATATGATAAATTCTGCCCGTTCTATAAGTCTGTTTGGATGATGCGCAACATCATTCATTTCTATAATTTGGCCAATCAGGCAGTGGAAAGAGGCGCTGGCATGGATGGGCAGAAGATAACATACACTCTGATTAAGCATCGATTGGGAGATCTTTTTTATCGTCTGGTGTCTCAAAAATTTGAGGACCCAGCAGAAGGAGAAGAAGCTCTTGTTTCGAAATTTAAGAAGCTGCACGACGATCTGACGAATGGCTTCTGGGCACTTGAAGACGAAAGTCGATGA 1875 43.36 MPSVYGARLTTFEDSDKEKEYGYVRKVSGPVVVADGMAGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVSVPALDKDILWDFQPKKLGSEGDLLTGGDLYATVFENSLMQHHIALPPNSMGKITYIAPPGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERNGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDQDFISIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEEALVSKFKKLHDDLTNGFWALEDESR 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43504935 43516165 - Bda015592.1 Bda10g00910 14798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00910 624 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 472 554 - -
Bda10g00910 624 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 623 - -
Bda10g00910 624 CDD V_A-ATPase_A 88 461 - -
Bda10g00910 624 Gene3D - 91 458 IPR027417 -
Bda10g00910 624 ProSitePatterns ATP synthase alpha and beta subunits signature. 450 459 IPR020003 GO:0005524
Bda10g00910 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 463 IPR027417 -
Bda10g00910 624 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 623 IPR022878 GO:0046034|GO:0046961
Bda10g00910 624 CDD ATP-synt_V_A-type_alpha_C 476 582 - -
Bda10g00910 624 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 18 89 IPR036121 GO:0046034|GO:1902600
Bda10g00910 624 Hamap V-type ATP synthase alpha chain [atpA]. 19 623 IPR022878 GO:0046034|GO:0046961
Bda10g00910 624 Pfam ATPsynthase alpha/beta subunit N-term extension 102 224 IPR031686 -
Bda10g00910 624 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 233 459 IPR000194 GO:0005524
Bda10g00910 624 Gene3D - 134 206 - -
Bda10g00910 624 Gene3D - 20 89 IPR023366 -
Bda10g00910 624 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Bda10g00910 624 TIGRFAM V-ATPase_V1_A: V-type ATPase, A subunit 20 612 IPR005725 GO:0033180|GO:0046961|GO:1902600
Bda10g00910 624 Gene3D - 460 609 IPR024034 -
Bda10g00910 624 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00910 Bda-Chr10:43504935 Bda11g00156 Bda-Chr11:2049691 2.69E-27 dispersed
Bda10g00910 Bda-Chr10:43504935 Bda04g00964 Bda-Chr4:59307377 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00910 K02145 - dcr:108209232 1194.87