Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00945 ATGAGCCCTCTGTTGCTAATGGAGTGGAGCATGAAACCACCTTATGATTGGAACCGTGAGCTGTCCATATTCAATTCTGAGGAAACAAAAAGTTTTAGTCATTTGGAACCCATGGAATGGTACAATCAAAGAGATCCAGAATTCGGTTTTGGATCTTTGAACTTGGCTGGAGATGGCAGGGGTTATGACAGTCCTGTGTCTGATTTGGTGAATTCCTCCTCGTCAAAAAGCATAAAATCAGCTTCCATATCCTTAATCGAGGAATGTAAAAATTCCAAAATCACAACTGATGATTTTGAAGCTTTTCTAGAAGATTGTGGTGAAAGAAAAGAGATGGTTAAGAATGGTTCAGCTGGAACTTATTCTGCCCTTGAGACTTCCGCCGGCTCTAGTGAACAGCTTTTCCTAAGTTTAAAGCTAGGTAAGGGGATGTATTATGAAGATTCATATTCTGAAAAAGCTGCGGCTACTTTATCTATGATGCCACCCACAAGTCAAAACAGAGCAAAGAGATGCAAATCTACCCATAAAAGTACATTAACCTCACGCTGCCAAGTCGAAGGTTGTAATATTGACCTTTCATCTGCCAAAGAGTACCATCGCAAGCATAGAGTTTGTGAAAGTCATTCTAGATCTCCCAATGTCATCATAGCTGGTCTTGAACGTCGGTTTTGCCAGCAGTGTAGCAGGTTTCATGGTTTATCTGACTTTGACGAGAAAAAGCGAAGCTGTCGTAAGCGTCTTTCTGATCACAATGCCAGGCGTCGTAAGTCTCTGCCAAAAGTAACAAATTTTAATTCAGGAATCACGTCATCAGTCTATGCAGATCCGAGGCAACAAATGGGCCTTTCTTTGGATATGGTTCCACCTACTTATCAGAGACCTGCAGCAAATTTAGCATGGGAAGCTCTATGCAGCGCCAAATACGCACAAACATGCCAAAGGAAACCTGAAAAAGCAATCTGCAAAAATGGGCAGCTAAATCCTCTGGGGATTGAGAAGCCGTTTACGATCACTATACCTCATCGTACCTCAAGTAAGCTCTTTGCAACCAGAGGAATTGCAGCTGACGATCTTAACCCAGGTTTCAATGAATATAGGATATCTTCAAGCATGGACGTAGCTCGGGATTACAATAGTGCTCTCTCTCTTCTGTCAACTGATGCTTGGGGATTGGGTGAATCGAAAAATATTTTGCCTCAGAACCACAAGCAACCAAACCAAATTAAAATGTCCTCAACTGGGATACAAACAACAAACCAGAGCACATCTCTTCTTTCAGACCAGTGGCGCAATGAGCACAATTCGTCTGCCTCCGGTTTCATATATTCCAGCAACAAGGTGATGGAGGTATAG 1356 42.33 MSPLLLMEWSMKPPYDWNRELSIFNSEETKSFSHLEPMEWYNQRDPEFGFGSLNLAGDGRGYDSPVSDLVNSSSSKSIKSASISLIEECKNSKITTDDFEAFLEDCGERKEMVKNGSAGTYSALETSAGSSEQLFLSLKLGKGMYYEDSYSEKAAATLSMMPPTSQNRAKRCKSTHKSTLTSRCQVEGCNIDLSSAKEYHRKHRVCESHSRSPNVIIAGLERRFCQQCSRFHGLSDFDEKKRSCRKRLSDHNARRRKSLPKVTNFNSGITSSVYADPRQQMGLSLDMVPPTYQRPAANLAWEALCSAKYAQTCQRKPEKAICKNGQLNPLGIEKPFTITIPHRTSSKLFATRGIAADDLNPGFNEYRISSSMDVARDYNSALSLLSTDAWGLGESKNILPQNHKQPNQIKMSSTGIQTTNQSTSLLSDQWRNEHNSSASGFIYSSNKVMEV 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43766901 43769338 + Bda015625.1 Bda10g00945 14833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00945 451 Pfam SBP domain 184 257 IPR004333 GO:0003677
Bda10g00945 451 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 438 IPR044817 GO:0003677
Bda10g00945 451 Gene3D - 180 245 IPR036893 GO:0003677|GO:0005634
Bda10g00945 451 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 27 438 - -
Bda10g00945 451 SUPERFAMILY SBT domain 183 262 IPR036893 GO:0003677|GO:0005634
Bda10g00945 451 MobiDBLite consensus disorder prediction 398 417 - -
Bda10g00945 451 ProSiteProfiles Zinc finger SBP-type profile. 181 258 IPR004333 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00945 - - - qsu:112038163 323.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00945 Bda-Chr10:43766901 Bda12g00119 Bda-Chr12:1052667 7.77E-28 dispersed
Bda12g00214 Bda-Chr12:2122740 Bda10g00945 Bda-Chr10:43766901 2.43E-19 dispersed
Bda13g00319 Bda-Chr13:4075441 Bda10g00945 Bda-Chr10:43766901 8.06E-22 dispersed
Bda10g00945 Bda-Chr10:43766901 Bda15g00679 Bda-Chr15:10230752 3.25E-30 transposed
Bda10g00945 Bda-Chr10:43766901 Bda07g01385 Bda-Chr7:16685349 5.39E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda12g00119 . 163 983 SBP-box Gene Family AT2G47070 57.6 8.3e-252 866.7
Bda05g00421 . 65 681 SBP-box Gene Family AT2G47070 61.0 2.8e-207 718.8
Bda10g00945 . 122 257 SBP-box Gene Family AT1G27370 55.7 1.5e-37 154.1
Bda12g00119 . 3 983 SBP-box Gene Family AT3G60030 55.3 1.1e-280 963.0
Bda05g00421 . 65 681 SBP-box Gene Family AT3G60030 59.3 2.6e-194 676.0
Bda14g01353 . 5 126 SBP-box Gene Family AT5G50570 65.9 4.1e-39 159.1
Bda15g00631 BCT 113 262 SBP-box Gene Family AT1G69170 55.3 9.6e-37 151.4
Bda12g00119 . 163 983 SBP-box Gene Family AT2G47070 57.6 8.3e-252 866.7
Bda05g00421 . 65 681 SBP-box Gene Family AT2G47070 61.0 2.8e-207 718.8
Bda15g00631 BCT 113 262 SBP-box Gene Family AT1G69170 55.3 9.6e-37 151.4
Bda10g00945 . 122 257 SBP-box Gene Family AT1G27370 55.7 1.5e-37 154.1
Bda12g00119 . 3 983 SBP-box Gene Family AT3G60030 55.3 1.1e-280 963.0
Bda05g00421 . 65 681 SBP-box Gene Family AT3G60030 59.3 2.6e-194 676.0
Bda14g01353 . 5 126 SBP-box Gene Family AT5G50570 65.9 4.1e-39 159.1
Bda14g01353 . 5 126 SBP-box Gene Family AT5G50670 65.9 4.1e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014120 1 0 0 1 1 0 2 0 0 0 0 0 2 0 0 2 0 2 2 0 0 1 1 1 1 0 1 2 1 2 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16534 PF03110 SBP 3.70E-31 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g00945 Bda_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0