Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00945 ATGAGCCCTCTGTTGCTAATGGAGTGGAGCATGAAACCACCTTATGATTGGAACCGTGAGCTGTCCATATTCAATTCTGAGGAAACAAAAAGTTTTAGTCATTTGGAACCCATGGAATGGTACAATCAAAGAGATCCAGAATTCGGTTTTGGATCTTTGAACTTGGCTGGAGATGGCAGGGGTTATGACAGTCCTGTGTCTGATTTGGTGAATTCCTCCTCGTCAAAAAGCATAAAATCAGCTTCCATATCCTTAATCGAGGAATGTAAAAATTCCAAAATCACAACTGATGATTTTGAAGCTTTTCTAGAAGATTGTGGTGAAAGAAAAGAGATGGTTAAGAATGGTTCAGCTGGAACTTATTCTGCCCTTGAGACTTCCGCCGGCTCTAGTGAACAGCTTTTCCTAAGTTTAAAGCTAGGTAAGGGGATGTATTATGAAGATTCATATTCTGAAAAAGCTGCGGCTACTTTATCTATGATGCCACCCACAAGTCAAAACAGAGCAAAGAGATGCAAATCTACCCATAAAAGTACATTAACCTCACGCTGCCAAGTCGAAGGTTGTAATATTGACCTTTCATCTGCCAAAGAGTACCATCGCAAGCATAGAGTTTGTGAAAGTCATTCTAGATCTCCCAATGTCATCATAGCTGGTCTTGAACGTCGGTTTTGCCAGCAGTGTAGCAGGTTTCATGGTTTATCTGACTTTGACGAGAAAAAGCGAAGCTGTCGTAAGCGTCTTTCTGATCACAATGCCAGGCGTCGTAAGTCTCTGCCAAAAGTAACAAATTTTAATTCAGGAATCACGTCATCAGTCTATGCAGATCCGAGGCAACAAATGGGCCTTTCTTTGGATATGGTTCCACCTACTTATCAGAGACCTGCAGCAAATTTAGCATGGGAAGCTCTATGCAGCGCCAAATACGCACAAACATGCCAAAGGAAACCTGAAAAAGCAATCTGCAAAAATGGGCAGCTAAATCCTCTGGGGATTGAGAAGCCGTTTACGATCACTATACCTCATCGTACCTCAAGTAAGCTCTTTGCAACCAGAGGAATTGCAGCTGACGATCTTAACCCAGGTTTCAATGAATATAGGATATCTTCAAGCATGGACGTAGCTCGGGATTACAATAGTGCTCTCTCTCTTCTGTCAACTGATGCTTGGGGATTGGGTGAATCGAAAAATATTTTGCCTCAGAACCACAAGCAACCAAACCAAATTAAAATGTCCTCAACTGGGATACAAACAACAAACCAGAGCACATCTCTTCTTTCAGACCAGTGGCGCAATGAGCACAATTCGTCTGCCTCCGGTTTCATATATTCCAGCAACAAGGTGATGGAGGTATAG 1356 42.33 MSPLLLMEWSMKPPYDWNRELSIFNSEETKSFSHLEPMEWYNQRDPEFGFGSLNLAGDGRGYDSPVSDLVNSSSSKSIKSASISLIEECKNSKITTDDFEAFLEDCGERKEMVKNGSAGTYSALETSAGSSEQLFLSLKLGKGMYYEDSYSEKAAATLSMMPPTSQNRAKRCKSTHKSTLTSRCQVEGCNIDLSSAKEYHRKHRVCESHSRSPNVIIAGLERRFCQQCSRFHGLSDFDEKKRSCRKRLSDHNARRRKSLPKVTNFNSGITSSVYADPRQQMGLSLDMVPPTYQRPAANLAWEALCSAKYAQTCQRKPEKAICKNGQLNPLGIEKPFTITIPHRTSSKLFATRGIAADDLNPGFNEYRISSSMDVARDYNSALSLLSTDAWGLGESKNILPQNHKQPNQIKMSSTGIQTTNQSTSLLSDQWRNEHNSSASGFIYSSNKVMEV 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43766901 43769338 + Bda015625.1 Bda10g00945 14833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00945 451 Pfam SBP domain 184 257 IPR004333 GO:0003677
Bda10g00945 451 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 438 IPR044817 GO:0003677
Bda10g00945 451 Gene3D - 180 245 IPR036893 GO:0003677|GO:0005634
Bda10g00945 451 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 27 438 - -
Bda10g00945 451 SUPERFAMILY SBT domain 183 262 IPR036893 GO:0003677|GO:0005634
Bda10g00945 451 MobiDBLite consensus disorder prediction 398 417 - -
Bda10g00945 451 ProSiteProfiles Zinc finger SBP-type profile. 181 258 IPR004333 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00945 Bda-Chr10:43766901 Bda12g00119 Bda-Chr12:1052667 7.77E-28 dispersed
Bda12g00214 Bda-Chr12:2122740 Bda10g00945 Bda-Chr10:43766901 2.43E-19 dispersed
Bda13g00319 Bda-Chr13:4075441 Bda10g00945 Bda-Chr10:43766901 8.06E-22 dispersed
Bda10g00945 Bda-Chr10:43766901 Bda15g00679 Bda-Chr15:10230752 3.25E-30 transposed
Bda10g00945 Bda-Chr10:43766901 Bda07g01385 Bda-Chr7:16685349 5.39E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16534 PF03110 SBP 3.70E-31 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00945 - - qsu:112038163 323.939