Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g00977 ATGATGAATTCGGACGCATTCAAAGGAGCGAATGTTTTCATGTCTCGAAATCTAGTACCGCCTGAGATATTCGATACTCTTCATGACGCTCTCAAGAACAACGGAGCCAAGGTCTTTCTCTGTTGCGATCCTTCTCGTAAAGGTCCTAACGATTACCATGTAATCTCATCAATGGATCATGAAAAGTTTGAAGATCTCCGTGCTAAGGGTTGCAATTTGCTTGGTCCTCAGTGTGTCCTTTCCTGTTCAATGGAACACAGAGCCCTTCCTCAACAAGGTTTTACTTGTTGCCTTGCCATGGATGGTGTAAAAGTGCTTGCATCTGGTTTTCAGGAAGATGAAAAGGCTAAAATAGAGAAGCTGGTGACTGCCATGGGGGGAGTGTTGCACGTTAAAGCATCTTTAGATGTCAGCTTTGTCATTGTAAACAGCGTTTTGGCTGCAAAATACAAGGTTTGCCACTTATTACTGACTTATGTGCAGTGGGCTTTAAATATTTTGAAGAAACCAATTGTTACAATTGATTGGTTGTATCAGTGCTGGAATGAGCATCGCATTGTACCTCATAAATCATGCAGAGTTCTGCCTTTCTCTGGATTAACAATTTCTGTCACTAGAATTCCAGCAGATGAGCGCAAGGAGATTGAAAAGCTTATCATGAATAACGCTCCTGAAGGTGACAAATATAAAGTTGCAAGAACATGGGGCCACATTAACATTGTGACTCGAAAATGGTTTGATCAATCCATTGCTAGAAAAGCATGTTTGAATGAGGAATCGTACCAAGTTTTGTCATCCAATAAAGTTGTTGGGGGTTGCTTAGTGTCTCGACATAGCCAGGGGAAGGTCATATCGCAATCTGAAGCATCCGCATTTGTTGCAGAGTCAAAAATTTCAGCAGTATCATGTTCTGGATTTGCGGATTTAGATTTAGAAGCTACTCTTTCACAGAGCAAATCTACGTTTTTTGAATCTTCTCCACCTACTAGGGAGGGTTGTGATGAAGTGGCCAATACATTGCCAAAAAATGTACAAATAGATAGTTGTGTTGCAGATGACTCCCAATCTGAAGATGGTGACCTATACTTGTCAGCATGTAGAATCTCGCTAGTTGGTTTTGAAGCTCCAGAGATGCATAAACTGATCAATATGGTTCGTAATGGTGGAGGCTCTCGGTACATGTTGCTCAATGATAAATTAACGCACATAATAGTTGGAACTCCTTCAGAAATGGAGAAGAAGGAGGTAAGAGACATTGCAGCTTCAGGCGTCATTCATGTGGTATGCACAACATGGCTTGAAGATTGTGATTATAAAAAAAAAGAGATTCCTGTTATTAGGAGACACATGGCTTTTGATAAACTTATTCCAAAAGACTCCAACAAAGGAGCTGGAATGGGCATGACCAGTTTAAATCAAAGTAAACCTTCTGTTAGCGTAAACATATCATCCAACCAAGAAAGCATGAGCTTGAGAGTTGGGGTGTCATCAATGGAGAAAAAAGTAGACGAGCAGTTGCAAATCAACATGAGTGTAGAGAGCACTGATGGTGCTACGACAACAATGTCTAATCAAAGTCGAGCTCCTGGTATAGATGGTATAAATAAAGGTCAACCAGCAATGCAGCGTGATTTCACTGTTCAAAATGGAATCTCCTCATGTGTCTTTAAAAGGAAAAATTTCCAATTTTCAACTTCATTTCCTGACGACAGGAGAGCTGAAATTGAACAATGGGTAACTCAAGGGGGTGGAATAGTAGTCGATGATCACGTGATTCAGAATGTGCACTTCCGAATTGAGTGTCATGGTGCGATTCCCAAAAGTGCTGAAGTTCACCAACTTACATATGTGTCCAGCCACTGGATCCGATCCTGTTTGGAGGATGGACACTTGCTGGATGTTAGAAGACATATACTATATTCTCCCCTTCCCTGCTCCATTCCTTTGCTAGGGTTGGAAAAGTGTAGGTTTTGTGTTTCACAATACGAGGATAAGGATCGAATACTGCTAAGAAATTTGTGTTTTGTACTCGGAGCAAAGTTTGTGGAGAAATTGACGAAGAAGGTCACTCATTTAGTTTGCAAGTTTGCCAGTGGACCAAAGTATGAAGCTGCTCGTAAATGGGGGATACATTCAATTACATCTGAATGGATATGTGAGTGTGTCAGACAGAATAAGGTTGTTTCTATGGATTCATACAGACCCAAGGAAGTTACAGCTCAAGACCACGAGAGTGGATTTTGCACTACAAGTCAGTTTCCAACACAAGCAGTTAGAATGATATCTGGAGATGGCTCATCCCAGTTTCCTAGTCAACATCAAGACCTAAAAGACTCACCAATGGAAATTGAAAATGGTAGTTATAGAAGAGACGACAAAGAATCAAGTTTTTCCAATAAAAAGGCTAGGCTTCTGGAAGATAGCCAAAGTTGTCTGATTCCTTCTGCAAATAATCCCACCAATTATGTCTCCATTGTGAATGAGGCAAAGGATAATGCATCAAAAAGTTCAATTGAGGTAATTGCCCCGGATGTAGCTTCTGCAATTGAAGACTTGTTGGAGCAAACTAGTAAGATTCGTGATCAGAAGTCACCTAAGCCTGGCAGTGATAAGAGTATTTTTGCACTCGAGTGTTCGATCCTTGGCCAAGATCATTCTGATAGCCACTCAGTTATAGGGTTATCGAAGCATTGGTTAAACAGGACTGAAAGAAAAGATGGCGCCAAGAATCCTTCTGGAGATGGAAGTGCAGGATTATATGACGGGTTTAGTGAAACACAGACTGATTCCCAGGTTGTGGGTTATGAAGAAGATTTGTCAGGAAGGCAAATGCTCATAGATAGAGTTCGAACGCGAAGTAGCATGATCTGA 2871 41.03 MMNSDAFKGANVFMSRNLVPPEIFDTLHDALKNNGAKVFLCCDPSRKGPNDYHVISSMDHEKFEDLRAKGCNLLGPQCVLSCSMEHRALPQQGFTCCLAMDGVKVLASGFQEDEKAKIEKLVTAMGGVLHVKASLDVSFVIVNSVLAAKYKVCHLLLTYVQWALNILKKPIVTIDWLYQCWNEHRIVPHKSCRVLPFSGLTISVTRIPADERKEIEKLIMNNAPEGDKYKVARTWGHINIVTRKWFDQSIARKACLNEESYQVLSSNKVVGGCLVSRHSQGKVISQSEASAFVAESKISAVSCSGFADLDLEATLSQSKSTFFESSPPTREGCDEVANTLPKNVQIDSCVADDSQSEDGDLYLSACRISLVGFEAPEMHKLINMVRNGGGSRYMLLNDKLTHIIVGTPSEMEKKEVRDIAASGVIHVVCTTWLEDCDYKKKEIPVIRRHMAFDKLIPKDSNKGAGMGMTSLNQSKPSVSVNISSNQESMSLRVGVSSMEKKVDEQLQINMSVESTDGATTTMSNQSRAPGIDGINKGQPAMQRDFTVQNGISSCVFKRKNFQFSTSFPDDRRAEIEQWVTQGGGIVVDDHVIQNVHFRIECHGAIPKSAEVHQLTYVSSHWIRSCLEDGHLLDVRRHILYSPLPCSIPLLGLEKCRFCVSQYEDKDRILLRNLCFVLGAKFVEKLTKKVTHLVCKFASGPKYEAARKWGIHSITSEWICECVRQNKVVSMDSYRPKEVTAQDHESGFCTTSQFPTQAVRMISGDGSSQFPSQHQDLKDSPMEIENGSYRRDDKESSFSNKKARLLEDSQSCLIPSANNPTNYVSIVNEAKDNASKSSIEVIAPDVASAIEDLLEQTSKIRDQKSPKPGSDKSIFALECSILGQDHSDSHSVIGLSKHWLNRTERKDGAKNPSGDGSAGLYDGFSETQTDSQVVGYEEDLSGRQMLIDRVRTRSSMI 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44028963 44036696 + Bda015659.1 Bda10g00977 14865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g00977 956 SUPERFAMILY BRCT domain 166 263 IPR036420 -
Bda10g00977 956 Gene3D BRCT domain 97 196 IPR036420 -
Bda10g00977 956 Gene3D BRCT domain 550 645 IPR036420 -
Bda10g00977 956 MobiDBLite consensus disorder prediction 764 798 - -
Bda10g00977 956 SUPERFAMILY BRCT domain 354 444 IPR036420 -
Bda10g00977 956 CDD BRCT 103 180 - -
Bda10g00977 956 Pfam BRCT domain, a BRCA1 C-terminus domain 553 636 IPR001357 -
Bda10g00977 956 ProSiteProfiles BRCT domain profile. 652 735 IPR001357 -
Bda10g00977 956 ProSiteProfiles BRCT domain profile. 100 194 IPR001357 -
Bda10g00977 956 ProSiteProfiles BRCT domain profile. 358 450 IPR001357 -
Bda10g00977 956 SUPERFAMILY BRCT domain 617 736 IPR036420 -
Bda10g00977 956 ProSiteProfiles BRCT domain profile. 218 263 IPR001357 -
Bda10g00977 956 ProSiteProfiles BRCT domain profile. 551 639 IPR001357 -
Bda10g00977 956 Gene3D BRCT domain 218 265 IPR036420 -
Bda10g00977 956 MobiDBLite consensus disorder prediction 903 923 - -
Bda10g00977 956 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 6 944 - -
Bda10g00977 956 SUPERFAMILY BRCT domain 555 641 IPR036420 -
Bda10g00977 956 Pfam twin BRCT domain 656 717 IPR001357 -
Bda10g00977 956 Gene3D BRCT domain 36 94 IPR036420 -
Bda10g00977 956 CDD BRCT_TopBP1_rpt2_like 196 253 - -
Bda10g00977 956 CDD BRCT_TopBP1_rpt2_like 652 725 - -
Bda10g00977 956 Gene3D BRCT domain 343 446 IPR036420 -
Bda10g00977 956 Gene3D BRCT domain 651 742 IPR036420 -
Bda10g00977 956 SUPERFAMILY BRCT domain 57 190 IPR036420 -
Bda10g00977 956 MobiDBLite consensus disorder prediction 777 798 - -
Bda10g00977 956 SMART BRCT_7 97 184 IPR001357 -
Bda10g00977 956 SMART BRCT_7 553 629 IPR001357 -
Bda10g00977 956 SMART BRCT_7 360 440 IPR001357 -
Bda10g00977 956 SMART BRCT_7 649 725 IPR001357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00850 Bda-Chr4:58357636 Bda10g00977 Bda-Chr10:44028963 5.32E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g00977 K10728 - zju:107421117 1199.5