Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g01016 ATGGCATCGAGATCATGTGCAAACTTTTTGGACTTGGCTTCTGGAGACTTGTTGGATATTCCTGATACTCCCAAGTCATTGCCACGAGTAATGACTGTTCATGGAATAATATCTGACATGGATGGTTATTGCAGTAATGATGCCGATTCAGAATCTTCTTCTGTATGTCATGATCGGAAAATTATTGTTGCAAATATGTTACCATTGCATGCTAAAAAGGACAGTGTATCTTCCAAATGGCCTAACTATAACCCAATAATTCTAATCGATCGCCATGTTCCTCGTTTTGAAAAGACTGCATATTACGCACTAGCGGAATGCTGCTTGGTGAATGCTGTGAGGGATGGGATGAACTTGGTTCCGTACAAGTATATTGTCTGCAGGGAAGGAACTCCAAACATGGACGAGGCTATGGGTATTGAAACTACTTGTCGTCGGACTAGCATGCTTGTTGTTTCTGAGTTCATTGGTTGCTCTCCTTCTTTAAGTGGAGCAATCAGGGTGAACCCTTGGGACATTGATGCTGTTGCTGATGCCTTAGATTTGGCAATTAGCATGCCAGATTCAGAGAAACAACTGCGGCACGAGAAACATTATCGTTATGTCAGTTCTCACGATGTAGGGTATTGGGCCCGCAGCTTTATGCAAGATTTAGAGAGAGCTTGCCAGGAACATTATAGTAAGCGGTGTTGGGGAATTGGTTTGGGCCTGAGGTTCAGAGTTGTTGCTCTTAATCCTGGTTTTAGAAAGTTGTGCGTTGACCACATTGTCTCAGCTTATAAACGAACTCAGAGGAGAGCTATATTTCTAGATTATGATGGTACTGTCGTTCCACAGAATTCAATAATAAAGACTCCTAGCCCAGAAGTCATTTCTGTTCTTAGAGCCCTCTGTGACGATCCAAAGAACATCGTGTTTATCGTAAGTGGAAGGGGGAGAATTCCTTTGAGCGACTGGTTTTCTTCTTGTGAATTGCTGGGCATTGCAGCCGAACATGGCTACTTTACAAGGTGGGGTGGAAATTCAGAGTGGGAAATTAGTCCGGCAACTTGTGATCTTGATTGGATTAAAATTGTCGATCCAGTGATGCGATCGTATACAGAGGCAACTGATGGTTCGTACATAGAGACTAAAGAGAGTGCATTGGTTTGGCATCACAGGGATGCAGATTCTGACTTTGGGTCTTGCCAAGCCAAAGAACTACTAGGAGTGAACAAGGGTCTGGTGGCTGAAAAGGTTCTCATGAAAATGGTGAATGGTGGGAAGCCTCCTGATTTTGTCATGTGTGTAGGAGACGATAGATCCGACGAAGACATGTTCGAGGGCATACTAAGCACTATCTCTAGCTCTTCCTTGCCAGTAGCTCCTGAGATTTTCGCCTGCACTGTCGGGCGGAAGCCAAGCAAAGCCAAGTTTTATCTCGATGACCCATCAGACGTCGTGAAATTGCTGCAAGGCCTGGCTTCTGCATCATGTCCAAAGCCTAGGCATCTTACACAAACCCAGGTATCTTTCGAAAGCATCACTTGA 1530 44.31 MASRSCANFLDLASGDLLDIPDTPKSLPRVMTVHGIISDMDGYCSNDADSESSSVCHDRKIIVANMLPLHAKKDSVSSKWPNYNPIILIDRHVPRFEKTAYYALAECCLVNAVRDGMNLVPYKYIVCREGTPNMDEAMGIETTCRRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALDLAISMPDSEKQLRHEKHYRYVSSHDVGYWARSFMQDLERACQEHYSKRCWGIGLGLRFRVVALNPGFRKLCVDHIVSAYKRTQRRAIFLDYDGTVVPQNSIIKTPSPEVISVLRALCDDPKNIVFIVSGRGRIPLSDWFSSCELLGIAAEHGYFTRWGGNSEWEISPATCDLDWIKIVDPVMRSYTEATDGSYIETKESALVWHHRDADSDFGSCQAKELLGVNKGLVAEKVLMKMVNGGKPPDFVMCVGDDRSDEDMFEGILSTISSSSLPVAPEIFACTVGRKPSKAKFYLDDPSDVVKLLQGLASASCPKPRHLTQTQVSFESIT 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44329733 44332500 - Bda015694.1 Bda10g01016 14904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g01016 509 CDD HAD_TPP 267 482 - -
Bda10g01016 509 Pfam Glycosyltransferase family 20 82 219 IPR001830 GO:0003824|GO:0005992
Bda10g01016 509 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 80 IPR001830 GO:0003824|GO:0005992
Bda10g01016 509 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 82 402 IPR001830 GO:0003824|GO:0005992
Bda10g01016 509 Gene3D Glycogen Phosphorylase B; 70 203 - -
Bda10g01016 509 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 1 80 - -
Bda10g01016 509 Gene3D - 265 498 IPR023214 -
Bda10g01016 509 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 82 402 - -
Bda10g01016 509 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 403 498 IPR001830 GO:0003824|GO:0005992
Bda10g01016 509 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 403 498 - -
Bda10g01016 509 SUPERFAMILY HAD-like 266 487 IPR036412 -
Bda10g01016 509 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 81 223 - -
Bda10g01016 509 Pfam Trehalose-phosphatase 403 478 IPR003337 GO:0003824|GO:0005992
Bda10g01016 509 Pfam Trehalose-phosphatase 269 402 IPR003337 GO:0003824|GO:0005992
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g01016 K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] - csv:101212688 719.153
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g01016 Bda-Chr10:44329733 Bda11g00014 Bda-Chr11:210111 1.86E-06 dispersed
Bda10g01016 Bda-Chr10:44329733 Bda07g01593 Bda-Chr7:29562641 1.54E-37 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda07g00964 . 1 849 Trehalose Biosynthesis Gene Families AT1G06410 74.2 0.0e+00 1328.2
Bda08g00635 BCT 1 852 Trehalose Biosynthesis Gene Families AT1G06410 65.0 0.0e+00 1146.0
Bda07g01593 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.6 0.0e+00 1088.9
Bda11g00014 . 1 839 Trehalose Biosynthesis Gene Families AT1G06410 60.3 5.3e-311 1063.5
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT1G06410 64.1 1.5e-294 1008.8
Bda06g00586 . 1 542 Trehalose Biosynthesis Gene Families AT1G06410 59.9 9.3e-191 664.1
Bda10g01016 . 81 491 Trehalose Biosynthesis Gene Families AT1G06410 57.7 1.1e-143 507.7
Bda07g00245 . 87 698 Trehalose Biosynthesis Gene Families AT1G16980 64.6 6.2e-243 837.0
Bda09g00542 . 87 698 Trehalose Biosynthesis Gene Families AT1G16980 63.8 2.6e-241 831.6
Bda07g01593 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 75.1 0.0e+00 1365.9
Bda11g00014 . 1 845 Trehalose Biosynthesis Gene Families AT1G23870 65.7 0.0e+00 1181.4
Bda08g00635 BCT 1 854 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1101.7
Bda07g00964 . 1 857 Trehalose Biosynthesis Gene Families AT1G23870 60.5 0.0e+00 1090.1
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT1G23870 62.3 6.6e-285 976.9
Bda06g00586 . 1 533 Trehalose Biosynthesis Gene Families AT1G23870 71.3 1.0e-229 793.5
Bda10g01016 . 83 508 Trehalose Biosynthesis Gene Families AT1G23870 67.9 4.3e-183 638.6
Bda07g01593 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 74.2 0.0e+00 1351.3
Bda11g00014 . 1 841 Trehalose Biosynthesis Gene Families AT1G60140 63.0 0.0e+00 1131.7
Bda08g00635 BCT 1 851 Trehalose Biosynthesis Gene Families AT1G60140 59.8 1.2e-310 1062.4
Bda07g00964 . 1 857 Trehalose Biosynthesis Gene Families AT1G60140 59.5 2.6e-310 1061.2
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT1G60140 59.3 1.4e-274 942.6
Bda06g00586 . 1 550 Trehalose Biosynthesis Gene Families AT1G60140 66.8 2.1e-222 769.2
Bda10g01016 . 82 509 Trehalose Biosynthesis Gene Families AT1G60140 64.8 9.1e-178 620.9
Bda08g00635 BCT 1 853 Trehalose Biosynthesis Gene Families AT1G68020 69.5 0.0e+00 1252.3
Bda07g00964 . 1 857 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1133.2
Bda07g01593 . 1 842 Trehalose Biosynthesis Gene Families AT1G68020 64.7 0.0e+00 1129.4
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT1G68020 70.9 0.0e+00 1119.4
Bda11g00014 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.5 0.0e+00 1116.3
Bda06g00586 . 1 534 Trehalose Biosynthesis Gene Families AT1G68020 62.7 3.8e-200 695.3
Bda10g01016 . 81 491 Trehalose Biosynthesis Gene Families AT1G68020 59.6 2.8e-150 529.6
Bda07g01593 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.6 0.0e+00 1207.2
Bda11g00014 . 1 838 Trehalose Biosynthesis Gene Families AT1G70290 60.9 4.4e-307 1050.4
Bda07g00964 . 1 858 Trehalose Biosynthesis Gene Families AT1G70290 57.2 1.3e-290 995.7
Bda08g00635 BCT 1 866 Trehalose Biosynthesis Gene Families AT1G70290 56.3 6.2e-285 976.9
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT1G70290 56.7 1.0e-247 853.2
Bda06g00586 . 1 550 Trehalose Biosynthesis Gene Families AT1G70290 68.1 1.4e-223 773.1
Bda10g01016 . 82 508 Trehalose Biosynthesis Gene Families AT1G70290 65.1 1.7e-173 606.7
Bda07g00245 . 1 933 Trehalose Biosynthesis Gene Families AT1G78580 78.5 0.0e+00 1463.0
Bda09g00542 . 1 927 Trehalose Biosynthesis Gene Families AT1G78580 78.3 0.0e+00 1459.1
Bda11g00014 . 11 838 Trehalose Biosynthesis Gene Families AT2G18700 68.8 0.0e+00 1173.3
Bda07g01593 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 63.2 0.0e+00 1075.1
Bda08g00635 BCT 25 852 Trehalose Biosynthesis Gene Families AT2G18700 59.4 1.4e-295 1012.3
Bda07g00964 . 1 847 Trehalose Biosynthesis Gene Families AT2G18700 56.0 4.9e-288 987.3
Bda06g01263 BCT 41 714 Trehalose Biosynthesis Gene Families AT2G18700 63.4 1.4e-266 916.0
Bda06g00586 . 1 533 Trehalose Biosynthesis Gene Families AT2G18700 58.6 4.1e-186 648.7
Bda10g01016 . 74 491 Trehalose Biosynthesis Gene Families AT2G18700 56.9 9.2e-146 514.6
Bda08g00635 BCT 1 848 Trehalose Biosynthesis Gene Families AT4G17770 77.7 0.0e+00 1362.4
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT4G17770 76.3 0.0e+00 1189.1
Bda07g00964 . 1 857 Trehalose Biosynthesis Gene Families AT4G17770 64.8 0.0e+00 1166.8
Bda07g01593 . 1 840 Trehalose Biosynthesis Gene Families AT4G17770 65.4 0.0e+00 1155.2
Bda11g00014 . 1 835 Trehalose Biosynthesis Gene Families AT4G17770 61.9 0.0e+00 1094.3
Bda06g00586 . 3 529 Trehalose Biosynthesis Gene Families AT4G17770 61.0 2.9e-200 695.7
Bda10g01016 . 81 489 Trehalose Biosynthesis Gene Families AT4G17770 58.6 4.1e-154 542.3
Bda07g00245 . 95 927 Trehalose Biosynthesis Gene Families AT4G27550 62.7 4.4e-304 1040.4
Bda09g00542 . 95 926 Trehalose Biosynthesis Gene Families AT4G27550 62.5 2.9e-303 1037.7
Bda07g00245 . 1 933 Trehalose Biosynthesis Gene Families AT1G78580 78.5 0.0e+00 1463.0
Bda09g00542 . 1 927 Trehalose Biosynthesis Gene Families AT1G78580 78.3 0.0e+00 1459.1
Bda07g00245 . 87 698 Trehalose Biosynthesis Gene Families AT1G16980 64.6 6.2e-243 837.0
Bda09g00542 . 87 698 Trehalose Biosynthesis Gene Families AT1G16980 63.8 2.6e-241 831.6
Bda07g00245 . 95 623 Trehalose Biosynthesis Gene Families AT1G17000 62.4 1.1e-193 673.7
Bda09g00542 . 95 623 Trehalose Biosynthesis Gene Families AT1G17000 61.4 7.7e-192 667.5
Bda07g00245 . 95 927 Trehalose Biosynthesis Gene Families AT4G27550 62.7 4.4e-304 1040.4
Bda09g00542 . 95 926 Trehalose Biosynthesis Gene Families AT4G27550 62.5 2.9e-303 1037.7
Bda08g00635 BCT 1 848 Trehalose Biosynthesis Gene Families AT4G17770 77.7 0.0e+00 1362.4
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT4G17770 76.3 0.0e+00 1189.1
Bda07g00964 . 1 857 Trehalose Biosynthesis Gene Families AT4G17770 64.8 0.0e+00 1166.8
Bda07g01593 . 1 840 Trehalose Biosynthesis Gene Families AT4G17770 65.4 0.0e+00 1155.2
Bda11g00014 . 1 835 Trehalose Biosynthesis Gene Families AT4G17770 61.9 0.0e+00 1094.3
Bda06g00586 . 3 529 Trehalose Biosynthesis Gene Families AT4G17770 61.0 2.9e-200 695.7
Bda10g01016 . 81 489 Trehalose Biosynthesis Gene Families AT4G17770 58.6 4.1e-154 542.3
Bda08g00635 BCT 1 853 Trehalose Biosynthesis Gene Families AT1G68020 69.5 0.0e+00 1252.3
Bda07g00964 . 1 857 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1133.2
Bda07g01593 . 1 842 Trehalose Biosynthesis Gene Families AT1G68020 64.7 0.0e+00 1129.4
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT1G68020 70.9 0.0e+00 1119.4
Bda11g00014 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.5 0.0e+00 1116.3
Bda06g00586 . 1 534 Trehalose Biosynthesis Gene Families AT1G68020 62.7 3.8e-200 695.3
Bda10g01016 . 81 491 Trehalose Biosynthesis Gene Families AT1G68020 59.6 2.8e-150 529.6
Bda07g00964 . 1 849 Trehalose Biosynthesis Gene Families AT1G06410 74.2 0.0e+00 1328.2
Bda08g00635 BCT 1 852 Trehalose Biosynthesis Gene Families AT1G06410 65.0 0.0e+00 1146.0
Bda07g01593 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.6 0.0e+00 1088.9
Bda11g00014 . 1 839 Trehalose Biosynthesis Gene Families AT1G06410 60.3 5.3e-311 1063.5
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT1G06410 64.1 1.5e-294 1008.8
Bda06g00586 . 1 542 Trehalose Biosynthesis Gene Families AT1G06410 59.9 9.3e-191 664.1
Bda10g01016 . 81 491 Trehalose Biosynthesis Gene Families AT1G06410 57.7 1.1e-143 507.7
Bda07g01593 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.6 0.0e+00 1207.2
Bda11g00014 . 1 838 Trehalose Biosynthesis Gene Families AT1G70290 60.9 4.4e-307 1050.4
Bda07g00964 . 1 858 Trehalose Biosynthesis Gene Families AT1G70290 57.2 1.3e-290 995.7
Bda08g00635 BCT 1 866 Trehalose Biosynthesis Gene Families AT1G70290 56.3 6.2e-285 976.9
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT1G70290 56.7 1.0e-247 853.2
Bda06g00586 . 1 550 Trehalose Biosynthesis Gene Families AT1G70290 68.1 1.4e-223 773.1
Bda10g01016 . 82 508 Trehalose Biosynthesis Gene Families AT1G70290 65.1 1.7e-173 606.7
Bda07g01593 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 75.1 0.0e+00 1365.9
Bda11g00014 . 1 845 Trehalose Biosynthesis Gene Families AT1G23870 65.7 0.0e+00 1181.4
Bda08g00635 BCT 1 854 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1101.7
Bda07g00964 . 1 857 Trehalose Biosynthesis Gene Families AT1G23870 60.5 0.0e+00 1090.1
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT1G23870 62.3 6.6e-285 976.9
Bda06g00586 . 1 533 Trehalose Biosynthesis Gene Families AT1G23870 71.3 1.0e-229 793.5
Bda10g01016 . 83 508 Trehalose Biosynthesis Gene Families AT1G23870 67.9 4.3e-183 638.6
Bda07g01593 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 74.2 0.0e+00 1351.3
Bda11g00014 . 1 841 Trehalose Biosynthesis Gene Families AT1G60140 63.0 0.0e+00 1131.7
Bda08g00635 BCT 1 851 Trehalose Biosynthesis Gene Families AT1G60140 59.8 1.2e-310 1062.4
Bda07g00964 . 1 857 Trehalose Biosynthesis Gene Families AT1G60140 59.5 2.6e-310 1061.2
Bda06g01263 BCT 1 714 Trehalose Biosynthesis Gene Families AT1G60140 59.3 1.4e-274 942.6
Bda06g00586 . 1 550 Trehalose Biosynthesis Gene Families AT1G60140 66.8 2.1e-222 769.2
Bda10g01016 . 82 509 Trehalose Biosynthesis Gene Families AT1G60140 64.8 9.1e-178 620.9
Bda11g00014 . 11 838 Trehalose Biosynthesis Gene Families AT2G18700 68.8 0.0e+00 1173.3
Bda07g01593 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 63.2 0.0e+00 1075.1
Bda08g00635 BCT 25 852 Trehalose Biosynthesis Gene Families AT2G18700 59.4 1.4e-295 1012.3
Bda07g00964 . 1 847 Trehalose Biosynthesis Gene Families AT2G18700 56.0 4.9e-288 987.3
Bda06g01263 BCT 41 714 Trehalose Biosynthesis Gene Families AT2G18700 63.4 1.4e-266 916.0
Bda06g00586 . 1 533 Trehalose Biosynthesis Gene Families AT2G18700 58.6 4.1e-186 648.7
Bda10g01016 . 74 491 Trehalose Biosynthesis Gene Families AT2G18700 56.9 9.2e-146 514.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0032361 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1