Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g01066 ATGTGTAGGATGGGAAGGGTGAAACTGAAGATAAAGAGGTTGGAGAACACAAATGGCCGTCAAGCAACTTATGCCAAAAGGAAACATGGGATTATGAAGAAGGCTAATGAGTTATCAATATTGTGCGACATAGACATTATTCTTCTCATGTTTTCACCTACAGGAAAACCCTCTTTATGCAGCGGAAAGCGCAGTTCGATTGAAGAGGTCATTGCAAAGTTTGCTCAGCTAACTCCTCAAGAAAGGGCTAAAAGGAAATTGGAAAGCCTTGAAGCACTGAAGAAAACTTTTAAGAAGTTAGACCATGACGTTAATATTGAAGAATTTTTGGGTACAAGTACTCAGACCATTGAGGACTTGGCTAGCCAAGCTAAGTTATTACAGGCTCAACTTTCAGAAGTACACAATAGATTGAGTTATTGGACGAATCCCGATAAGATCAATAGTGTAGAGCATTTGACCCAAATGGAAAATTCACTGAGGGAATCCCTCAACCAAATTCAAGCTCACAAGGAAAATCTACAGAAGCATCCACTTATTCCACTAGATTGCTCTGGTCAGTTCCAAAATGCAATGCATATACCTTTTCGAATGGGCTCTGAGCAGCAGCTCCAACCTTTTTCGTGGATTCCGAATAACGACAATCATCCTATGGTTTTGCCCGAGGACCCGCACTTCATTCCCCATCGGGATGTGGAGTGCTCTGCGAGTTCCTCCTTCGCTAGCTATTCTGGTTATTTCGGCACGGGCAGAAGTCCAGAGATGTCTAATTCTGGGCAAGATAATGGAGTTCTCCATGAACTGAGCAGAACAACAGCTCTAAGACCTCAATTGGGTGGGCAGTTTCCCTACCTGCCATACAATGTCAATTTTCTGAGCGATGCGAAATTCCAACCGACAGAGATGAATCCACCTGAAAATCAGGTCGATTATCATATTAATGGGAGCTTTGAAACTCCGAGACCTGCATTTGACTCCGCCAACCACAACTGGGCCTCAACTTCCGGCCCTTGCCCCGTAAATGTGTTTGACGACCGGCTCTATCCTCAGCAACGAAATTGA 1062 43.88 MCRMGRVKLKIKRLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCSGKRSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIEEFLGTSTQTIEDLASQAKLLQAQLSEVHNRLSYWTNPDKINSVEHLTQMENSLRESLNQIQAHKENLQKHPLIPLDCSGQFQNAMHIPFRMGSEQQLQPFSWIPNNDNHPMVLPEDPHFIPHRDVECSASSSFASYSGYFGTGRSPEMSNSGQDNGVLHELSRTTALRPQLGGQFPYLPYNVNFLSDAKFQPTEMNPPENQVDYHINGSFETPRPAFDSANHNWASTSGPCPVNVFDDRLYPQQRN 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44672294 44675217 + Bda015746.2 Bda10g01066 14954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g01066 353 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 57 IPR002100 GO:0003677|GO:0046983
Bda10g01066 353 SUPERFAMILY SRF-like 5 98 IPR036879 GO:0003677|GO:0046983
Bda10g01066 353 Coils Coil 153 177 - -
Bda10g01066 353 CDD MADS_SRF_like 5 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bda10g01066 353 Coils Coil 80 100 - -
Bda10g01066 353 ProSiteProfiles MADS-box domain profile. 4 56 IPR002100 GO:0003677|GO:0046983
Bda10g01066 353 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 4 352 - -
Bda10g01066 353 SMART madsneu2 4 63 IPR002100 GO:0003677|GO:0046983
Bda10g01066 353 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 352 - -
Bda10g01066 353 Gene3D - 17 100 IPR036879 GO:0003677|GO:0046983
Bda10g01066 353 PRINTS MADS domain signature 6 26 IPR002100 GO:0003677|GO:0046983
Bda10g01066 353 PRINTS MADS domain signature 41 62 IPR002100 GO:0003677|GO:0046983
Bda10g01066 353 PRINTS MADS domain signature 26 41 IPR002100 GO:0003677|GO:0046983
Bda10g01066 353 Coils Coil 117 137 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g01066 - - - jre:109009266 535.798
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g01066 Bda-Chr10:44672294 Bda14g01027 Bda-Chr14:8651581 4.25E-26 dispersed
Bda10g01066 Bda-Chr10:44672294 Bda07g01472 Bda-Chr7:27448160 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda10g01066 . 4 352 Type I MADS-box Gene Family AT2G03060 51.4 1.1e-95 347.1
Bda07g01472 . 1 351 Type I MADS-box Gene Family AT2G03060 50.4 3.5e-89 325.5
Bda15g00471 . 1 178 Type I MADS-box Gene Family AT5G60440 55.4 1.9e-45 179.9
Bda10g00822 . 3 171 Type I MADS-box Gene Family AT5G48670 60.8 4.8e-55 211.8
Bda08g01106 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 1.1e-54 210.7
Bda01g01380 . 1 169 Type I MADS-box Gene Family AT5G48670 59.5 5.5e-51 198.4
Bda13g01554 . 1 174 Type I MADS-box Gene Family AT5G48670 58.5 1.2e-50 197.2
Bda13g01546 . 1 174 Type I MADS-box Gene Family AT5G48670 57.4 2.7e-50 196.1
Bda10g01066 . 4 352 Type I MADS-box Gene Family AT2G03060 51.4 1.1e-95 347.1
Bda07g01472 . 1 351 Type I MADS-box Gene Family AT2G03060 50.4 3.5e-89 325.5
Bda15g00471 . 1 178 Type I MADS-box Gene Family AT5G60440 55.4 1.9e-45 179.9
Bda10g00822 . 3 171 Type I MADS-box Gene Family AT5G48670 60.8 4.8e-55 211.8
Bda08g01106 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 1.1e-54 210.7
Bda01g01380 . 1 169 Type I MADS-box Gene Family AT5G48670 59.5 5.5e-51 198.4
Bda13g01554 . 1 174 Type I MADS-box Gene Family AT5G48670 58.5 1.2e-50 197.2
Bda13g01546 . 1 174 Type I MADS-box Gene Family AT5G48670 57.4 2.7e-50 196.1
Bda10g01066 . 4 352 Type I MADS-box Gene Family AT2G03060 51.4 1.1e-95 347.1
Bda07g01472 . 1 351 Type I MADS-box Gene Family AT2G03060 50.4 3.5e-89 325.5
Bda15g00471 . 1 178 Type I MADS-box Gene Family AT5G60440 55.4 1.9e-45 179.9
Bda10g00822 . 3 171 Type I MADS-box Gene Family AT5G48670 60.8 4.8e-55 211.8
Bda08g01106 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 1.1e-54 210.7
Bda01g01380 . 1 169 Type I MADS-box Gene Family AT5G48670 59.5 5.5e-51 198.4
Bda13g01554 . 1 174 Type I MADS-box Gene Family AT5G48670 58.5 1.2e-50 197.2
Bda13g01546 . 1 174 Type I MADS-box Gene Family AT5G48670 57.4 2.7e-50 196.1
Bda10g01066 . 4 352 Type I MADS-box Gene Family AT2G03060 51.4 1.1e-95 347.1
Bda07g01472 . 1 351 Type I MADS-box Gene Family AT2G03060 50.4 3.5e-89 325.5
Bda15g00471 . 1 178 Type I MADS-box Gene Family AT5G60440 55.4 1.9e-45 179.9
Bda10g00822 . 3 171 Type I MADS-box Gene Family AT5G48670 60.8 4.8e-55 211.8
Bda08g01106 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 1.1e-54 210.7
Bda01g01380 . 1 169 Type I MADS-box Gene Family AT5G48670 59.5 5.5e-51 198.4
Bda13g01554 . 1 174 Type I MADS-box Gene Family AT5G48670 58.5 1.2e-50 197.2
Bda13g01546 . 1 174 Type I MADS-box Gene Family AT5G48670 57.4 2.7e-50 196.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006439 2 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16541 PF00319 SRF-TF 3.20E-18 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g01066 Bda_Chr10 FPKM 3.474171 3.442181 4.347385 3.909857 4.358711 5.2571 5.9111 5.243565 4.355815