Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g01066 ATGTGTAGGATGGGAAGGGTGAAACTGAAGATAAAGAGGTTGGAGAACACAAATGGCCGTCAAGCAACTTATGCCAAAAGGAAACATGGGATTATGAAGAAGGCTAATGAGTTATCAATATTGTGCGACATAGACATTATTCTTCTCATGTTTTCACCTACAGGAAAACCCTCTTTATGCAGCGGAAAGCGCAGTTCGATTGAAGAGGTCATTGCAAAGTTTGCTCAGCTAACTCCTCAAGAAAGGGCTAAAAGGAAATTGGAAAGCCTTGAAGCACTGAAGAAAACTTTTAAGAAGTTAGACCATGACGTTAATATTGAAGAATTTTTGGGTACAAGTACTCAGACCATTGAGGACTTGGCTAGCCAAGCTAAGTTATTACAGGCTCAACTTTCAGAAGTACACAATAGATTGAGTTATTGGACGAATCCCGATAAGATCAATAGTGTAGAGCATTTGACCCAAATGGAAAATTCACTGAGGGAATCCCTCAACCAAATTCAAGCTCACAAGGAAAATCTACAGAAGCATCCACTTATTCCACTAGATTGCTCTGGTCAGTTCCAAAATGCAATGCATATACCTTTTCGAATGGGCTCTGAGCAGCAGCTCCAACCTTTTTCGTGGATTCCGAATAACGACAATCATCCTATGGTTTTGCCCGAGGACCCGCACTTCATTCCCCATCGGGATGTGGAGTGCTCTGCGAGTTCCTCCTTCGCTAGCTATTCTGGTTATTTCGGCACGGGCAGAAGTCCAGAGATGTCTAATTCTGGGCAAGATAATGGAGTTCTCCATGAACTGAGCAGAACAACAGCTCTAAGACCTCAATTGGGTGGGCAGTTTCCCTACCTGCCATACAATGTCAATTTTCTGAGCGATGCGAAATTCCAACCGACAGAGATGAATCCACCTGAAAATCAGGTCGATTATCATATTAATGGGAGCTTTGAAACTCCGAGACCTGCATTTGACTCCGCCAACCACAACTGGGCCTCAACTTCCGGCCCTTGCCCCGTAAATGTGTTTGACGACCGGCTCTATCCTCAGCAACGAAATTGA 1062 43.88 MCRMGRVKLKIKRLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCSGKRSSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIEEFLGTSTQTIEDLASQAKLLQAQLSEVHNRLSYWTNPDKINSVEHLTQMENSLRESLNQIQAHKENLQKHPLIPLDCSGQFQNAMHIPFRMGSEQQLQPFSWIPNNDNHPMVLPEDPHFIPHRDVECSASSSFASYSGYFGTGRSPEMSNSGQDNGVLHELSRTTALRPQLGGQFPYLPYNVNFLSDAKFQPTEMNPPENQVDYHINGSFETPRPAFDSANHNWASTSGPCPVNVFDDRLYPQQRN 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44672294 44675217 + Bda015746.2 Bda10g01066 14954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g01066 353 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 57 IPR002100 GO:0003677|GO:0046983
Bda10g01066 353 SUPERFAMILY SRF-like 5 98 IPR036879 GO:0003677|GO:0046983
Bda10g01066 353 Coils Coil 153 177 - -
Bda10g01066 353 CDD MADS_SRF_like 5 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bda10g01066 353 Coils Coil 80 100 - -
Bda10g01066 353 ProSiteProfiles MADS-box domain profile. 4 56 IPR002100 GO:0003677|GO:0046983
Bda10g01066 353 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 4 352 - -
Bda10g01066 353 SMART madsneu2 4 63 IPR002100 GO:0003677|GO:0046983
Bda10g01066 353 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 352 - -
Bda10g01066 353 Gene3D - 17 100 IPR036879 GO:0003677|GO:0046983
Bda10g01066 353 PRINTS MADS domain signature 6 26 IPR002100 GO:0003677|GO:0046983
Bda10g01066 353 PRINTS MADS domain signature 41 62 IPR002100 GO:0003677|GO:0046983
Bda10g01066 353 PRINTS MADS domain signature 26 41 IPR002100 GO:0003677|GO:0046983
Bda10g01066 353 Coils Coil 117 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g01066 Bda-Chr10:44672294 Bda14g01027 Bda-Chr14:8651581 4.25E-26 dispersed
Bda10g01066 Bda-Chr10:44672294 Bda07g01472 Bda-Chr7:27448160 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16541 PF00319 SRF-TF 3.20E-18 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g01066 - - jre:109009266 535.798