Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g01107 ATGGGAAGAGGTCGGGTTCAGTTGAAGAGGATAGAGAACAAGATCAATCGACAGGTTACGTTTTCCAAAAGGAGAAGTGGGTTGCTTAAAAAAGCTCATGAGATCTCTGTTTTATGCGATGCTGATGTTGCTCTGATTGTTTTCTCCCACAAAGGGAAGCTTTTTGAATACGCTACTGATTCTTGCATGGAGAAAATACTTGAGCGATACGAGAGATACTCCTATGCTGAAAGACGGCCACTCTCATCAGAAGCTGAGTTGCAGGTCAACTGGACTTTTGAGTATTCCAGACTCAAAGCGAAGATTGAGATTCTACAAAAAAACCAAAGGCAATATCTTGGAGAAGATTTGGAGTCTGTGAGTCTGAAAGGCCTTCAAAGATTAGAGCAGGAGCTTGATACTGCTCTCAAACAAGTTCGAACTAGAAAAGTATGA 435 41.61 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSHKGKLFEYATDSCMEKILERYERYSYAERRPLSSEAELQVNWTFEYSRLKAKIEILQKNQRQYLGEDLESVSLKGLQRLEQELDTALKQVRTRKV 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45092866 45098363 - Bda015796.1 Bda10g01107 14995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g01107 144 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda10g01107 144 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda10g01107 144 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Bda10g01107 144 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 142 - -
Bda10g01107 144 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda10g01107 144 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bda10g01107 144 Pfam K-box region 86 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda10g01107 144 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 142 - -
Bda10g01107 144 Coils Coil 95 115 - -
Bda10g01107 144 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda10g01107 144 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda10g01107 144 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda10g01107 144 ProSiteProfiles K-box domain profile. 88 144 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda10g01107 144 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Bda10g01107 144 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g01107 Bda-Chr10:45092866 Bda11g00336 Bda-Chr11:3774502 2.14E-51 dispersed
Bda01g02119 Bda-Chr1:57227731 Bda10g01107 Bda-Chr10:45092866 7.56E-75 transposed
Bda11g01170 Bda-Chr11:12050423 Bda10g01107 Bda-Chr10:45092866 1.76E-76 transposed
Bda14g00891 Bda-Chr14:6915385 Bda10g01107 Bda-Chr10:45092866 2.74E-56 transposed
Bda10g01107 Bda-Chr10:45092866 Bda14g00890 Bda-Chr14:6909384 4.66E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16542 PF01486 K-box 1.40E-17 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g01107 K09264 - qsu:112022353 235.343