Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g01120 ATGCAAAACATGCAAGATTTCCAGGAAGAGCTGCAGTTCCAGCAACAATATCTGATTCAGCAGCTTCAAAACAATGGAGGAGGAGGAAGAGAATATGATTTCTCTCAAGTTTCTCCGATGTTACAGCCATGGTCGGAGCCTTTTCTGATCCCTCCTCCGCCATTGTCGTATCCTGCTGGTTTCTTCAACCGGACTGCTCCTTCTCTTCAGTTTGCTTACGATGGTTCGTCAATGGAGCAGCTGAGAATTTTGTCCAACAGTTTTGGGGTCCAAGCTGAGATTGATAAGATGACTGCTCAAGAAATTATGGACGCTAAAGCTCTTGCTGCTTCAAAGAGTCATAGCGAAGCTGAGAGAAGACGAAGAGAGAGAATCAATAATCATCTTGCTAAGCTTCGAACTTTACTACCTAGCACCACCAAGACAGATAAAGCTTCACTACTGGCGGAGGTAATACAACACGTAAAAGAACTAAAGCGACAAACTTCGTTGATCACCGAAACAAATCTAGTTCCGACTGAAAACGACGAGCTCACAGTCGATGCGTCTGACGATGACGGAAAGTTCGTAATCAGAGCGTCAATTTGCTGCGATGATCGGTCCGATCTTTTGCCCGACCTGATAAAAACCCTAAAATCACTCCGTTTAAGAACTCTAAAAGCGGAGATCACGACGATGGGAGGAAGAACGAAGAACGTGCTATTTATAACTGGAGACGACGATTCCAGTGGAGAGGGGGAAGAGCAGGAGCAGCTGTATTGTATAAGCTCAATTCAAGAAGCACTAAAGGCAGTAATGGAGAAGACAAGAGGGGATGATTCGAATAATCCTTCAACAGTTGTTAAGAGGCAGAGGACCAGTAATGTCAATACCCTTTGA 879 44.6 MQNMQDFQEELQFQQQYLIQQLQNNGGGGREYDFSQVSPMLQPWSEPFLIPPPPLSYPAGFFNRTAPSLQFAYDGSSMEQLRILSNSFGVQAEIDKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRTLLPSTTKTDKASLLAEVIQHVKELKRQTSLITETNLVPTENDELTVDASDDDGKFVIRASICCDDRSDLLPDLIKTLKSLRLRTLKAEITTMGGRTKNVLFITGDDDSSGEGEEQEQLYCISSIQEALKAVMEKTRGDDSNNPSTVVKRQRTSNVNTL 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45186331 45188116 - Bda015810.1 Bda10g01120 15008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g01120 292 MobiDBLite consensus disorder prediction 271 292 - -
Bda10g01120 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 113 166 IPR036638 GO:0046983
Bda10g01120 292 SMART finulus 115 164 IPR011598 GO:0046983
Bda10g01120 292 CDD bHLH_AtAIG1_like 104 182 - -
Bda10g01120 292 Pfam Helix-loop-helix DNA-binding domain 112 158 IPR011598 GO:0046983
Bda10g01120 292 PANTHER TRANSCRIPTION FACTOR BHLH30 37 291 - -
Bda10g01120 292 Gene3D - 103 168 IPR036638 GO:0046983
Bda10g01120 292 CDD ACT_UUR-ACR-like 194 262 - -
Bda10g01120 292 MobiDBLite consensus disorder prediction 267 292 - -
Bda10g01120 292 PANTHER TRANSCRIPTION FACTOR BHLH30 37 291 IPR045847 GO:0003700|GO:0006355
Bda10g01120 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 158 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00912 Bda-Chr1:42151035 Bda10g01120 Bda-Chr10:45186331 3.12E-36 dispersed
Bda03g00638 Bda-Chr3:5431357 Bda10g01120 Bda-Chr10:45186331 1.03E-43 dispersed
Bda10g01120 Bda-Chr10:45186331 Bda11g01131 Bda-Chr11:11301471 1.33E-110 dispersed
Bda10g01120 Bda-Chr10:45186331 Bda01g02101 Bda-Chr1:57108307 2.95E-130 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16545 PF00010 HLH 1.10E-12 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g01120 - - jre:108993280 331.643