Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g01143 ATGGACGGAAGTTGCACTGATGAAAGCACGGCGAGTGAATCCACCTCTATCTCTCCGGTGACTCCACTGGCTTTTCCGGTTGCTAAGTGCTCTTCCCAGCCGGAGGGTCGGTACCGTATGGGCGGTGGAACGAGTGTCGTTGTGGACTCCGATCAGTCGTGCGGTGTGGAAGCGGAGTCAAGAAAGCTCCCCTCCTCCAGGTTCAAAGGGGTGGTGCCGCAGCCCAATGGGCGGTGGGGGGCGCAGATTTATGAAAAGCATCAACGGGTCTGGCTCGGCACTTTTAACGAGGAGGATGAGGCAGCCCGAGCGTATGATATCGCCGCTCAACGATTCCGCGGCCGCGATGCTGTCACCAATTTCAAGCCGCTTGCCGACACTGCCGACGACGACGTTGAGTTGGAGTTTATCAATTCACATTCGAAATCCGAGATCGTTGATATGCTACGTAAGCATACCTACAGCGATGAACTGCAGCAGAACAAACGAAGAAATGGGTTACAAAACGGCTATGGCAACCGAACAAGAGCCGTTGGCCTAACCGGTGCCGGACAGGACAATGATTCCAAGGAACGTGAGCTGCTTTTCGAAAAGGGGGTTACCCCTAGCGACGTCGGAAAATTGAACCGTCTAGTGATCCCCAAGCAATATGCCGAGAAGCACTTCCCGTTGCAGAGCGGAGCCGCCTCACCCAAAGGCATGCTTCTCAACTTCGAGGATGTTGGAGGAAAAGTATGGCGGTTCCGCTACTCGTTTTGGAACAGCAGCCAAAGCTACGTTCTAACAAAAGGGTGGAGCCGATTCGTCAAGGAGAAGAACCTCCATGCTGGAGACATCGTCAGCTTCCTCCGATCTACCGGACCGGAGAAACAGCTGTACATTGACTTCAAGGATCGGAATGGACGGGCGGTGGTGGCGGGATTTTCGAACCCAAAGCCACCGGTTCAGATAGTGAGACTATTTGGGGTGAATATTTTCAAAGCACCTGGAAATGGTATTGGTAGTGTAGATAGCGCCGCCTCAACGGGTGGCTGCCATGGGAAGAGAATAAGAGATCAAGTAGAGCTTTTAGGTTTAGAGTACAGTAAAAAGCAAAGGGTAATCGGAGCTCTGTAA 1116 52.78 MDGSCTDESTASESTSISPVTPLAFPVAKCSSQPEGRYRMGGGTSVVVDSDQSCGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAVTNFKPLADTADDDVELEFINSHSKSEIVDMLRKHTYSDELQQNKRRNGLQNGYGNRTRAVGLTGAGQDNDSKERELLFEKGVTPSDVGKLNRLVIPKQYAEKHFPLQSGAASPKGMLLNFEDVGGKVWRFRYSFWNSSQSYVLTKGWSRFVKEKNLHAGDIVSFLRSTGPEKQLYIDFKDRNGRAVVAGFSNPKPPVQIVRLFGVNIFKAPGNGIGSVDSAASTGGCHGKRIRDQVELLGLEYSKKQRVIGAL 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45485378 45486493 + Bda015841.1 Bda10g01143 15031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g01143 371 Gene3D - 184 306 IPR015300 -
Bda10g01143 371 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 371 IPR044800 GO:0003700
Bda10g01143 371 SUPERFAMILY DNA-binding domain 66 122 IPR016177 GO:0003677
Bda10g01143 371 MobiDBLite consensus disorder prediction 161 175 - -
Bda10g01143 371 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 1 371 - -
Bda10g01143 371 SUPERFAMILY DNA-binding pseudobarrel domain 193 298 IPR015300 -
Bda10g01143 371 Pfam B3 DNA binding domain 196 298 IPR003340 GO:0003677
Bda10g01143 371 Pfam AP2 domain 67 114 IPR001471 GO:0003700|GO:0006355
Bda10g01143 371 SMART rav1_2 67 128 IPR001471 GO:0003700|GO:0006355
Bda10g01143 371 Gene3D AP2/ERF domain 66 123 IPR036955 GO:0003700|GO:0006355
Bda10g01143 371 ProSiteProfiles AP2/ERF domain profile. 67 122 IPR001471 GO:0003700|GO:0006355
Bda10g01143 371 SMART B3_2 196 300 IPR003340 GO:0003677
Bda10g01143 371 MobiDBLite consensus disorder prediction 161 186 - -
Bda10g01143 371 ProSiteProfiles B3 DNA-binding domain profile. 196 300 IPR003340 GO:0003677
Bda10g01143 371 CDD AP2 66 121 IPR001471 GO:0003700|GO:0006355
Bda10g01143 371 CDD B3_DNA 195 282 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02092 Bda-Chr1:57063080 Bda10g01143 Bda-Chr10:45485378 6.28E-154 dispersed
Bda07g00726 Bda-Chr7:8559227 Bda10g01143 Bda-Chr10:45485378 1.18E-54 dispersed
Bda10g01143 Bda-Chr10:45485378 Bda11g00402 Bda-Chr11:4346008 1.03E-43 dispersed
Bda10g01143 Bda-Chr10:45485378 Bda07g01526 Bda-Chr7:28386869 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16549 PF02362 B3 2.00E-27 CL0405 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g01143 K09287 - vvi:100262843 484.567