Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g01154 ATGGCTGCATCTTCTTCATCAGTACCATTTCTAGGCATTAGAGAAGAAGAGCAAAACCAGATGAGGCAGCAACATTCATCCACGCCCAGTTCATCAGCAACTCCAGCTGCACCAGCACAGAAGAAAAAGAGGAATCAACCAGGAACACCAAGCATCTCTTACTTCAATCTGATTTCTCTGCATTTCCCACTTAGATCATCGTCATTTGGACATGATTATGTGTTTATTTTCGATACTTTTTCGATTTACTTAGCGGGGATGACAAAGTTACTTGGAAAAAAGTTGATTTTGTTTGTCTGGTTGACGTTGATGCCAGATGCAGAGGTAATAGCGCTATCTCCAAAAACACTAATGGCCACAAACAGGTTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGGGAGCAAAATCTACAGCTCCACAGAAGAGGACATAACTTACCTTGGAAGCTAAAGCAGAAGACTACAAAAGAGCCAAAGAGGAAGGTTTATCTCTGTCCTGAGCCAACATGCGTCCACCATGACCCTTCAAGAGCCCTAGGCGACCTTACAGGAATCAAAAAACACTACTCTCGCAAACATGGCGAGAAGAAATGGAAGTGCGAGAAATGTTCCAAAAGATACGCCGTTCAGTCTGATTGGAAGGCTCATTCTAAAACCTGTGGAACGAGGGAGTATCGATGCGATTGTGGCACTCTTTTCTCAAGGCGAGACAGCTTCATCACACACCGGGCTTTTTGCGACGCGTTAGCTCAAGAAACTGCGAGACACCCGCCAACCTTGACGAACTCCATTGGAAGCCATTTGTATGGAGGTGGAAGCAATGTAGGCTTAGGTTTATCTCAAGTGGGTCAGCAAATCTCTTCCTTACAAGATCAAACCAATCAATCAACCGACATTTTACGCCTCGGAGGTGGCGGAGGACGGGCCGGGCAATTCAACAATCTCTTGCACGGCCAGTCGATCGCATCGTCGTTCCGTCCTCAGCCTTCAATGGCTTCCTCAGCTTTCTTCTTGACAGACCAAAGCAATCAGAATTTTCATGAAGAGAGCCTTTCTCAACAAGGGTTGCTGCCAAACAAATCATTTCATGGGCTAATGCAATTTTCTGACCTCCAATCCAATCCGACCAATTCTCCAAACGCCAGTCTCTTCAACCTAGGGTTCTTATCGAATTCGAGCAACAACATCGGAAACAACAACGACAATAATAACATCTTGATGTCTAATCAGTTCAACATTGGACCGAACGGAAATGGTAGCGAAACTTCGAATGTATATGCAATGGGGGATCAAATGGGCTCGAATTCAGTTCCTTCTCTATACACAACTTCAATTGAAAACAACTCCAGTATTCTTCACATGTCAGCCACTGCTCTACTTCAAAAGGCTGCTCAATTAGGCTCAACCACATCGGCCAACAACACGAGCGCCTCTTTGCTTCGATCGTTCGGAAGCACTTCCTCCGCCGGACCGAAATCGGAAAGGTCGATTCTTCCTACTAATATGAACGCCATTTTCAGCGAGAACGAGCACCACCATCTGCAAGACCTGATGAACTCATATTCCACCGGAAACTCCGCCTTCTTCTCCGGCGGGTCAGGAGGAATCACCGCGTTTGGCGGGTATGACGGAAGCAGAAGCAACATAGAAAATTTGGAAGAACCAAAACTTCATCAAACTCCATCAGTGAGCATTGGAGGATCAGATAGATTAACAAGAGATTTCTTAGGAGTTGGACAAGTTGTTAGAAGTATGAGCGGGGGGTATTCTCAAAGAGAACAAAACAACAACAACAACAACAACAACATGGAATCGATCACGTTGGTTCCATTAATACAGTGCAGAGCAACAACGCAGCAGCTCCTTCCAGCCAATCCTACGGAGGAGGAAGAAGAAGTTTTCAATGAAAGACGACACAGATTACAGGAAAAAAGAAGGTACGTACTTGAAATTTAA 1959 44.87 MAASSSSVPFLGIREEEQNQMRQQHSSTPSSSATPAAPAQKKKRNQPGTPSISYFNLISLHFPLRSSSFGHDYVFIFDTFSIYLAGMTKLLGKKLILFVWLTLMPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQETARHPPTLTNSIGSHLYGGGSNVGLGLSQVGQQISSLQDQTNQSTDILRLGGGGGRAGQFNNLLHGQSIASSFRPQPSMASSAFFLTDQSNQNFHEESLSQQGLLPNKSFHGLMQFSDLQSNPTNSPNASLFNLGFLSNSSNNIGNNNDNNNILMSNQFNIGPNGNGSETSNVYAMGDQMGSNSVPSLYTTSIENNSSILHMSATALLQKAAQLGSTTSANNTSASLLRSFGSTSSAGPKSERSILPTNMNAIFSENEHHHLQDLMNSYSTGNSAFFSGGSGGITAFGGYDGSRSNIENLEEPKLHQTPSVSIGGSDRLTRDFLGVGQVVRSMSGGYSQREQNNNNNNNNMESITLVPLIQCRATTQQLLPANPTEEEEEVFNERRHRLQEKRRYVLEI 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45605607 45610831 + Bda015856.1 Bda10g01154 15042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g01154 652 MobiDBLite consensus disorder prediction 22 48 - -
Bda10g01154 652 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 595 - -
Bda10g01154 652 ProSitePatterns Zinc finger C2H2 type domain signature. 125 145 IPR013087 -
Bda10g01154 652 SMART c2h2final6 199 219 IPR013087 -
Bda10g01154 652 SMART c2h2final6 164 194 IPR013087 -
Bda10g01154 652 SMART c2h2final6 123 145 IPR013087 -
Bda10g01154 652 Gene3D Classic Zinc Finger 106 171 - -
Bda10g01154 652 MobiDBLite consensus disorder prediction 1 48 - -
Bda10g01154 652 Gene3D Classic Zinc Finger 177 256 - -
Bda10g01154 652 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 595 - -
Bda10g01154 652 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 145 IPR013087 -
Bda10g01154 652 SUPERFAMILY beta-beta-alpha zinc fingers 122 219 IPR036236 -
Bda10g01154 652 Pfam Zinc-finger double-stranded RNA-binding 123 145 IPR022755 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g01154 Bda-Chr10:45605607 Bda12g01070 Bda-Chr12:42429856 6.08E-103 dispersed
Bda10g01154 Bda-Chr10:45605607 Bda10g00123 Bda-Chr10:3211502 4.54E-104 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16551 PF12171 zf-C2H2_jaz 4.10E-05 CL0361 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g01154 K25870 - jre:109006348 677.167