Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g01164 ATGTCGAATTTGGGCGGGTCCGGGAGCAAGAAGAGGCGGAGCGAGAGGGTTTATAAGTTTAGGAGGTTTGGCGAGAACGGGTATCCGGCTGAGTTAGTGGGCCGATCGTTTAGAGAGAATGTGAAAGCTCTGGTTGAATATGGACATTTGGAGAGTAAATTATGGAGTGGATTGAGAAGTTGGTCTTTTCAGCTGGAAGTGAATAGACATCCTCCATTTCATGTTCTTCTCTTTGTTGTTGAGGAACCCATTGAAGCTTCCCCCTATCTCCATTGTAAGCCATGCCAATTTGTAGGCTGGGGGCATCATATGATCTGCAACAAGAAGTACCATTTTCTGTTGCCGTCCAAAGACACCTTATTGGCTGCATGCTTTGACAACAACGGAGGAGATAATTGGTGGGGAAAGGTTGCAGATTTAGGCGGCCACATCTTGCATGGCGTCTTCCACTCCAATGGCTTCGGCCATTTGCTCTCCCTCAATGGTCTCGAAGCCGGCTCTGACCTCCCCGGCCATTCTGTAATGGACTTGTGGGATCGTCTCTGTACTGGACTCCGAGCAAGGAAAGTGAGTCTGAAAGACGTTTCGGAGAAGAAAGGGATGGAACTGAGGCTTGTTTATGGAGTTGCAGAGGGGCAGCCATGGTTTCACCGATGGGGCTATTCGTTTAGCAGAGGGACCTTCTGCGTCACGCCGGAAATGTACGAGAAAGCCATTGAAGCCATTAGAACCATCCCACTAACCTTCCTTCTTCCTCATCTCCACTTCGTCTTCTCCAAATACCTAGTACTTTCAGAAAACTCCATAGCCAACCTCGGTGATCTCTTCCACTTCCTCCTCGAACTCAAATCGAGGATTCCATCCCAAAATTCTGCCGATTCTTTTTCAAATCAGATTGGGATTTTGACCGAGAATTCCTGCCGGTGGTCCCCCAAGAGAGTGGAAATGGCAGTCAGAGTGATCGTAGAATCGTTGAAACAGGCCGAATTCCGGTGGGTTTCCCGGCAAGAGGTTAGAGATTCTGCCCGTGTTTACATCGGCGATACTGGTCTGCTTGATTTCGTTTTGAAATCGTTAGGAAATCACGTGGTCGGAAAATATCTTGTTCGCCGGAGCTTAAATCCGGTTACAAAAGTTCTTGAATATTGCTTGCAAGACATTTCGAATCTGTTTCCCAATCAAGAATCTGCAATATTTCTTCAAAATCCAAAAGTAAAAACGCGAACGGATATGATAAATCGAGCTCAGATAACCAATGACATGGTTTGTCTCTACAAAGCCATCTTCTCCGACCAGACAAACACTCCTATTTCTTCAGCTATATCAGTGGCCGCCAGAATAATCCTCGATTCAAAATACCTTACAAAGGATTACGAACACGGGTCCGATGCCGGAAAACGGCATCTCTTCTGCACCGTGAAGCTCAAGGAATCCATCACGCCGCCTCCATACGAGAGTTTCCCGCTGAAAACAGGTTCCACCATTGACGAGCTTAAGCGAGAAGTTGAAAAAACTTTCAGCGAAATATACTACGGACTGAGGACCTTCCAAGCGGAATCAATCGTTAATCTGAACGCAGATGGATCAGACGTAGTATTGAATATGGTGGAATATGGACGAAAACTGGTTTTCGAGGGAAGCGATAGAGAGATAAAGAGAATGGAGGAAGTGTATGAAAATGGCGACATGCAGACGAGGGTGGTGGTTTGCAGGTGTGGAGCTGAGGAAGACGATGGAGAGCGAATGATTTGCTGTGATATTTGCGAAGCGTGGCAGCACAGTCGATGCGTTCATATTCCAGACGATGAAGAAATTCCCACCATTTTTCTCTGCAATCGATGCGAGAGAGAAATCCTGCTCTTGTCTTCTCTCCCATGA 1878 46.75 MSNLGGSGSKKRRSERVYKFRRFGENGYPAELVGRSFRENVKALVEYGHLESKLWSGLRSWSFQLEVNRHPPFHVLLFVVEEPIEASPYLHCKPCQFVGWGHHMICNKKYHFLLPSKDTLLAACFDNNGGDNWWGKVADLGGHILHGVFHSNGFGHLLSLNGLEAGSDLPGHSVMDLWDRLCTGLRARKVSLKDVSEKKGMELRLVYGVAEGQPWFHRWGYSFSRGTFCVTPEMYEKAIEAIRTIPLTFLLPHLHFVFSKYLVLSENSIANLGDLFHFLLELKSRIPSQNSADSFSNQIGILTENSCRWSPKRVEMAVRVIVESLKQAEFRWVSRQEVRDSARVYIGDTGLLDFVLKSLGNHVVGKYLVRRSLNPVTKVLEYCLQDISNLFPNQESAIFLQNPKVKTRTDMINRAQITNDMVCLYKAIFSDQTNTPISSAISVAARIILDSKYLTKDYEHGSDAGKRHLFCTVKLKESITPPPYESFPLKTGSTIDELKREVEKTFSEIYYGLRTFQAESIVNLNADGSDVVLNMVEYGRKLVFEGSDREIKRMEEVYENGDMQTRVVVCRCGAEEDDGERMICCDICEAWQHSRCVHIPDDEEIPTIFLCNRCEREILLLSSLP 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45667404 45669632 - Bda015865.1 Bda10g01164 15052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g01164 625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 558 622 IPR013083 -
Bda10g01164 625 ProSiteProfiles Zinc finger PHD-type profile. 567 617 IPR019787 -
Bda10g01164 625 SUPERFAMILY FYVE/PHD zinc finger 559 618 IPR011011 -
Bda10g01164 625 SMART PHD_3 569 615 IPR001965 -
Bda10g01164 625 CDD PHD_MMD1_like 570 614 - -
Bda10g01164 625 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 625 - -
Bda10g01164 625 Pfam PHD-finger 570 616 IPR019787 -
Bda10g01164 625 ProSitePatterns Zinc finger PHD-type signature. 570 614 IPR019786 -
Bda10g01164 625 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 8 625 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g01164 - - - qsu:112023686 766.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00366 Bda-Chr3:3077521 Bda10g01164 Bda-Chr10:45667404 2.61E-77 dispersed
Bda08g00752 Bda-Chr8:9430169 Bda10g01164 Bda-Chr10:45667404 4.94E-06 dispersed
Bda08g00759 Bda-Chr8:9692566 Bda10g01164 Bda-Chr10:45667404 4.78E-06 dispersed
Bda10g01164 Bda-Chr10:45667404 Bda14g01196 Bda-Chr14:11845892 3.89E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g00235 . 8 379 PHD Transcription Factor Family AT1G05380 54.8 1.5e-114 411.4
Bda03g01749 BCT 22 844 PHD Transcription Factor Family AT3G53680 53.6 2.2e-245 845.5
Bda14g00310 . 437 566 PHD Transcription Factor Family AT3G53680 53.8 4.0e-37 153.7
Bda15g00213 . 292 421 PHD Transcription Factor Family AT3G53680 53.1 3.4e-36 150.6
Bda08g00235 . 57 379 PHD Transcription Factor Family AT4G14920 59.6 4.0e-112 403.3
Bda03g00173 . 139 382 PHD Transcription Factor Family AT5G58610 54.0 4.2e-75 280.0
Bda10g01164 . 10 625 PHD Transcription Factor Family AT5G22260 50.1 3.7e-174 608.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009705 1 1 1 0 1 2 1 2 1 1 2 2 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16552 PF00628 PHD 1.10E-08 CL0390 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g01164 Bda_Chr10 FPKM 48.239681 51.345078 21.199581 21.790739 19.455845 15.131604 17.156836 1.563126 1.075625