Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g01174 ATGGTGCATACAGAAGGTGATGAAATGACTGTTCTTCAGAGACACATCGCATTCTTCGATAGAAATCACGACGGCGTCGTCTACCCGTGGGAGACTTTTCAAGGATTTCGAGCAGTAGGATGTGGAATCTTGTTGTCTGTGGCTGGTGGAATTCTCGTAAACATGGCTCTCAGCCAAAGCACTCGACCTGGAAAGTTTCCCTCCCCTTTATTCCCTGTCGTGATTAAAAATGCTCATAAAGCCAAACACAGGAGCGATACTGGTACATTCAACACCGAAGGAAGGTTTGATCCATCTAAATTCGAGGCGATTTTCACAAAAAATGCAAAAACTCATCCAAATGCATTGACATCTGAAGAACTAAGTGGAATGTTAAAGGCAAATCGAGAACGCACGGACCGTAATGGATGGATTATGAGCTATACTGAATGGAAGCTTTTGTTCCAGCTTGGGAAAGACAAAGATGGGTTGCTGCAGAAAGAAACTCTATTGGCTTTCTATGATGGAAGCTTGTTTGAGAAATTGGAGAAAGAGAGATTGTCTTCCAAAAAGAAACCCTAA 561 42.6 MVHTEGDEMTVLQRHIAFFDRNHDGVVYPWETFQGFRAVGCGILLSVAGGILVNMALSQSTRPGKFPSPLFPVVIKNAHKAKHRSDTGTFNTEGRFDPSKFEAIFTKNAKTHPNALTSEELSGMLKANRERTDRNGWIMSYTEWKLLFQLGKDKDGLLQKETLLAFYDGSLFEKLEKERLSSKKKP 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45728909 45730179 + Bda015875.1 Bda10g01174 15062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g01174 186 PANTHER INACTIVE PEROXYGENASE-LIKE PROTEIN-RELATED 7 185 - -
Bda10g01174 186 PANTHER PEROXYGENASE 3-RELATED 7 185 IPR007736 -
Bda10g01174 186 Pfam Caleosin related protein 8 175 IPR007736 -
Bda10g01174 186 SUPERFAMILY EF-hand 12 167 IPR011992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g01174 K17991 PXG; peroxygenase [EC:1.11.2.3] - pop:7482909 241.891
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01800 Bda-Chr1:54206848 Bda10g01174 Bda-Chr10:45728909 2.57E-85 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda01g01800 . 13 187 Pollen Coat Proteome AT1G23240 60.6 6.3e-59 224.2
Bda10g01174 . 7 185 Pollen Coat Proteome AT1G23240 54.7 4.3e-55 211.5
Bda01g01800 . 13 187 Pollen Coat Proteome AT1G23240 60.6 6.3e-59 224.2
Bda10g01174 . 7 185 Pollen Coat Proteome AT1G23240 54.7 4.3e-55 211.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007695 2 1 0 0 3 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda10g01174 Bda_Chr10 FPKM 91.971786 102.803101 94.701607 97.279694 51.923241 50.086346 51.009857 83.557777 82.543251