Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda10g01177 ATGGACGTGAGATCGTTTCGCGATAAGCGAGCCAAGCTGGCCTGGATCGATTGTTTGGAACTCTATGAAGACACCGTCGATAAGCTCAACAAATCATTGAGCTCCATTAGTGTTTTTGACCATCTAACATGGTTAAGTGCTTCCATCACTAATCATCAAACTTGTCAAAATGGGTTTGAGGAATTCAACCTATCTTCTTATCTTGATTCATTTCCTCCCATTTTAACCACCTTCTTTAAGATCCTCAGCAATTCTCTTGCCTTAGCCAAGGCCTCTTCATTATCTTCTTCTTCTTCCTCCTCCTCCGCAGCTTTTGCATTCACTCGACAAAAGGTTGGCAAGAGGTTGCTCTCCGACGGCTTTCCGGACTGGCTCTCGGCCGGTGATCGACGGCTTCTCCAATCCTCCGGCGGAAAAAAAGGTGACGTCGTTGTTGCCAAAGATGGGTCGGGAAATTATGAATCCATTATGCAGGCTGTAAATTCAGCAGGAAAGAGGGGAGGATCAAGATTTGTCATTTATGTGAAATCCGGTGTTTATAAAGAAAATGTTGTGATCAAGAAGACGATAAAGAATATTATGATTATTGGAGATGGAACTGGTTCCACCATTGTTACAGCCGACAACAGCGCTGAAGATGGGTCTACCACTTTTCGTTCTGCCACCATTGGAATCTCAGGAGATGGATTCATAGCACAAGACATAACCTTTGAGAACACCGCCGGACCCCAAAAACACCAGGCGGTAGCCGTCCGGTCAAGCTCCGACCACTCCGTCTTCTACCGGTGCAGCATCAAGGGCTACCAAGACACCCTCTACGTGTACTCGCAGCGGCAATTCTACCGAGACTGCGACATTTATGGGACCGTCGACTTCATCTTTGGAAACGCCGTCGCCGTCATCCAAAACTGCAACATCTACGTAAGAAAACCGATGGGGAACCAGCAAAATACGGTTACAGCGCAAGGGAGAACCGACCCAAATGAGAACACCGGAATCATAATCCATAACTCACGTATAACCGCTTCGTCGGACCTCCTACCGTCGCAAAATTCTTTCAAAACTTTTCTTGGCCGGCCATGGAAAAAATACTCGAGGACTGTAATTATGAAAACGGTACTCGACGGTTTGATCGATCCGGCGGGGTGGGCACCGTGGAGTGGGAGTTTCGCATTGAGTACTCTTTACTATGGCGAGTACATGAATACTGGGAGCGGGGCTAATACTGGGCGGAGAGTGAAATGGGGAGGGTTTCGGGTCATAACGAGTCCGCTGGAGGCCGGAAAGTTCACAGTAGGGAACTTTCTGGCAGGTGGGTCGTGGATTCCTGCAACCGGAGTTCCGTTCGCGGCGGGTTTATGA 1362 48.31 MDVRSFRDKRAKLAWIDCLELYEDTVDKLNKSLSSISVFDHLTWLSASITNHQTCQNGFEEFNLSSYLDSFPPILTTFFKILSNSLALAKASSLSSSSSSSSAAFAFTRQKVGKRLLSDGFPDWLSAGDRRLLQSSGGKKGDVVVAKDGSGNYESIMQAVNSAGKRGGSRFVIYVKSGVYKENVVIKKTIKNIMIIGDGTGSTIVTADNSAEDGSTTFRSATIGISGDGFIAQDITFENTAGPQKHQAVAVRSSSDHSVFYRCSIKGYQDTLYVYSQRQFYRDCDIYGTVDFIFGNAVAVIQNCNIYVRKPMGNQQNTVTAQGRTDPNENTGIIIHNSRITASSDLLPSQNSFKTFLGRPWKKYSRTVIMKTVLDGLIDPAGWAPWSGSFALSTLYYGEYMNTGSGANTGRRVKWGGFRVITSPLEAGKFTVGNFLAGGSWIPATGVPFAAGL 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45743637 45746860 + Bda015878.1 Bda10g01177 15065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda10g01177 453 Pfam Pectinesterase 142 438 IPR000070 GO:0030599|GO:0042545
Bda10g01177 453 Gene3D - 138 453 IPR012334 -
Bda10g01177 453 CDD PMEI-like_3 8 65 - -
Bda10g01177 453 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 1 452 - -
Bda10g01177 453 Pfam Plant invertase/pectin methylesterase inhibitor 12 88 IPR006501 GO:0004857
Bda10g01177 453 SUPERFAMILY Pectin lyase-like 140 452 IPR011050 -
Bda10g01177 453 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 90 IPR006501 GO:0004857
Bda10g01177 453 ProSitePatterns Pectinesterase signature 1. 167 186 IPR018040 -
Bda10g01177 453 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 4 90 IPR035513 -
Bda10g01177 453 Gene3D Invertase/pectin methylesterase inhibitor family protein 3 91 IPR035513 -
Bda10g01177 453 PANTHER PECTINESTERASE 1 452 - -
Bda10g01177 453 ProSitePatterns Pectinesterase signature 2. 286 295 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g01177 Bda-Chr10:45743637 Bda15g00760 Bda-Chr15:11202090 0 dispersed
Bda10g01177 Bda-Chr10:45743637 Bda10g00629 Bda-Chr10:40316479 2.43E-154 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda10g01177 - - zju:107429290 631.328