Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda10g01198 | ATGGAAGCCTCGCCGACGTCCACGACGGCGCCGGAACCGCATGCCCCGCTTTTACGGCCTCGCCAGCCCTCCACCTCTGAAGGTACCAGCTCCCCCGCCCGACCATCCACTCTCGCTTTTCTACTTGGTCGAGCCACCGGCCATCGCGGTCCCTCCATGTTGGTCCGGGAGACTGCGGCTCGGCAGCTCGACGAGCGACGGGTCGACTGGGGCTATTCCAAACCGGTGGTGGTGCTCGATATCATGTGGAACGCGGCTTTTGTTGTTGTGACTGTGGTTATGTTGATTTGCACAACCAAAGAGCACGCTGACACGCCGCTTCGGCTATGGATCTGTGGGTACGCTTTGCAGTGTGTGATTCACGTTGTCCTGGTGTGGTTAGAGTATAGGAGGAGGAGTGTGAGGCGAGTTAGGGATTTGGAGCGGGAGCAGCAGGGAGGAGATGCTACGAATGAAAGCGAGGATGAGGATTCTGGACAGAGGGGTTTGGCTAGTTTGAACCATGTCAACAAACGATGTGAATCAGTAAACACGATGGCATCATTTCTCTGGTGGATAGTTGGCTTCTATTGGGTTGTCTCCGGCGGTGATGCTCTTCTGCGAAAAGCTCCTTATTTGTATTGGTTGGCTGTTGTCTTTCTGGCATTTGATGTGTTTTTTGCCATCTTTTGTGTTGTTTTGGCATGTTTGATTGGGATTGCTCTTTGTTGCTGCTTGCCTTGCATCATTGCCATTCTCTACACCGTTGCAGGACAGGAAGGTGCATCGGAAGCAGATCTTAGTATCCTCCCAAAATACAGATTTCAAGCGTTCAATGACGAAGAGAAGGCCAATGTGGGGGTTGGTTTGATGGTTCCTGGAGAAACAAGCAGTGGATACTTGGCGACCGAGAAAACACTTTTATCTGAAGATGCAGAGTGTTGTATATGTTTGAGTTCATATGAGGATGGAGCAGAGCTCAATGCTCTTCCCTGTAGCCACCATTTCCACTCTGCATGTATCATAAAATGGCTGAAGATGAATGCTACATGTCCTCTTTGCAAATACAACATTCTCAAAGGCTGTGAGCAAGTGTAA | 1077 | 50.51 | MEASPTSTTAPEPHAPLLRPRQPSTSEGTSSPARPSTLAFLLGRATGHRGPSMLVRETAARQLDERRVDWGYSKPVVVLDIMWNAAFVVVTVVMLICTTKEHADTPLRLWICGYALQCVIHVVLVWLEYRRRSVRRVRDLEREQQGGDATNESEDEDSGQRGLASLNHVNKRCESVNTMASFLWWIVGFYWVVSGGDALLRKAPYLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYTVAGQEGASEADLSILPKYRFQAFNDEEKANVGVGLMVPGETSSGYLATEKTLLSEDAECCICLSSYEDGAELNALPCSHHFHSACIIKWLKMNATCPLCKYNILKGCEQV | 358 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 45980959 | 45984066 | - | Bda015906.1 | Bda10g01198 | 15086 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda10g01198 | 358 | PANTHER | TARGET OF ERK KINASE MPK-1 | 12 | 355 | - | - | |
| Bda10g01198 | 358 | SUPERFAMILY | RING/U-box | 295 | 352 | - | - | |
| Bda10g01198 | 358 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Bda10g01198 | 358 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 290 | 354 | IPR013083 | - | |
| Bda10g01198 | 358 | SMART | ring_2 | 307 | 347 | IPR001841 | - | |
| Bda10g01198 | 358 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE RIE1-LIKE | 12 | 355 | - | - | |
| Bda10g01198 | 358 | Pfam | Ring finger domain | 306 | 348 | IPR001841 | - | |
| Bda10g01198 | 358 | ProSiteProfiles | Zinc finger RING-type profile. | 307 | 348 | IPR001841 | - | |
| Bda10g01198 | 358 | CDD | RING-H2_PA-TM-RING | 306 | 348 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda07g01752 | Bda-Chr7:32975913 | Bda10g01198 | Bda-Chr10:45980959 | 0 | dispersed | |
| Bda10g01198 | Bda-Chr10:45980959 | Bda13g00332 | Bda-Chr13:4176181 | 8.37E-112 | dispersed | |
| Bda11g01823 | Bda-Chr11:53472840 | Bda10g01198 | Bda-Chr10:45980959 | 1.87E-10 | dispersed | |
| Bda10g01198 | Bda-Chr10:45980959 | Bda08g00529 | Bda-Chr8:5286865 | 1.26E-106 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda10g01198 | - | K13148 | tcc:18609876 | 518.85 |