Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00025 ATGTCCTTCACAATAACTAATGGAATCAGCGAAGAAAGAGACTCTTTCATCGTCCCCTTACTTTCTTCTCAGAGATCCGCCCTTAACTGTTCTTCCCAGGTCGCCATTGTCGGGTCTAAAGTCTGCCCCATCGAGAGCCTCGACTACGAGTGGGATTTTGAGAACGAAATCTTCAAACAGGATTGGAGGAGCCGTCGGAAGTTGCAGATTTTGATTAAATTGGAGAGTGGTTGGATAATACTAATAGAAGTTTCAAACTTCTGTTTCAGGTATTGGATGGCGTTTCTTGTTTTTTTAATTTCGAATTTGGTTCTCACTCTATTTGCAGCTCTGATCACGATATTGGTCTCCCCGGCCGCGGCCGGATCGGGTATTCCGGAAGTCAAAGCCTATTTGAATGGCGTTGACGCGCCGAGAATTTTTTCGATAAAAACACTGATTGTGAAGGTGGTTGGCAGCATTTCGGTGGGATCGTCGTCTTTGCTAGTAGGAAAGGCGGGGCCTATGGTGCATACCGGTGCTTGCGTTGCATCTCTGCTAGGTCAGGGCGGGTCGACGAAATATCATTTGACATGTAGATTTCTTCGGTATTTCAGGAACGACAGAGACCGGCGCGATCTCATAACGTGCGGGGCAGCTGCCGGAATCGCAGCTGCTTTTCGTGCGCCGGTGGGTGGTTTGCTCTTCGCTTTCGAAGAGATGGTATCTTGGTCCGTTCTGTTTTATTTCTCTTATACCTTGCTACGACAAACGACTACTTATACATGTCAATTTTTGCTAATACTTTCGATAAACAGGTGGCGGAGTGCCCTTTTGTGGCGGGCATTTTTCACGACGGCCGTCGTTGCGATTATATTACGATCTTTAATCGATGTTTGCTTAAGTGGAAGATGTGGATTATTTGGAACTGGAGGTCTGATAATGTTTGATGTGTATTCAGAATCTGTAACATATCATCTAGTGGATGTTCCTGCGGTGCTCGCCCTCGGAGTCATCGGAGGGATGCTCGGAAGCTGTTTCAACTTCATTTTAGGCAAAGTTCTTCGACTTTACAGTCTGGTAAACGAGAAAGGCGTTGCTTACAAGATTCTGCTCGCCGCCGCCGTCTCGATTTTCACGTCCTGTCTTCTTTTCGGATTGCCGTGGCTCGGAATTTGCCAGCCTTGCCCGACGACCTCATCGGAAGAGTGTCCGACAATCGGACGGTCAGGGAAATACAAAAAATTTCAATGTTCGGCCGATCACTACAACGATCTCGCTAGTCTCATATTCAACACGAGCGACGACGCGATTAAAAATCTCTTCAGCAAAGATTCCGACTCGGAGTTTCAATACTCGTCGATCATCATATTTTTCATCACCTGCTATTGCTTAAGCATTATCTGCTATGGAGTTGTGGCTCCGATCGGTCTGTTTATCCCCGTTATCCTGACCGGAGCTTCCTACGGGCGTTTGGTCGGGATGTTAGTGGGTTCGCGCACGAAGCTCGACCACGGGCTTTTCGCCGTACTCGGAGCGGTCTCGTTGCTCGGAGGTACGATGCGAATGACGGTGTCTCTTTCCGTTATCATCCTCGAACTAACCAACAATCTCTTATTGCTTCCTCTGGTAATGGTGGTTTCTCTCGTCTCCAAAACCGTCGCCGATGCGTTCAACAGCAATATCTACGACCAAATCATGAAAGCCAAAGGGTTTCCATATCTCGAGTCCCATGCCGAGCCGTACATGCGGCAGCTGACGGTCGGCGACGTCGTCATGGGTCCGCTTCAGATATTTCAAGGGATCGAGAAAGTGAGTAACATCGTACATGTCCTTCGAATGACAAGACATCATGGTTTTCCTGTCGTCGACGAGCCTCCATTCTCCGATTCCCCTGTTCTGTTCGGAATTGTTCTTCGAGCCCATTTGATAACGTTGTTGAAGAAGAAAGCTTTCTTAACAACGACTGTGCCGATCGATATTAGTGCTTATACGGAATTATCAGCAGGAGATTTCGCGAAGAGGGGCTCGAATAACAAAGAGGATATCGAGGACGTCGAATTGACCGAGGAAGAGATGGGGATGTTCGTCGATCTCCATTTGTTTAGTAATGCTTCGCCTTATACGGTTGTGGAAACGATGTCATTAGCGAAAGCTCTGGTTCTTTTCCGGCAAGTTGGATTAAGACATATGCTCGTCATTCCAAAAGTTTCCGGCAGATCGCCGGTCGTGGGTATATTAACGCGGCACGATTTCATGTCGGAACACGTACTGGGTTTGTATCCTTCGCTGGTGAAAAGCAAGTGGAAGAGACTCAGAATCCAGATTCCGCAGTTGAGTAGATTCTTCAAATGA 2334 47.47 MSFTITNGISEERDSFIVPLLSSQRSALNCSSQVAIVGSKVCPIESLDYEWDFENEIFKQDWRSRRKLQILIKLESGWIILIEVSNFCFRYWMAFLVFLISNLVLTLFAALITILVSPAAAGSGIPEVKAYLNGVDAPRIFSIKTLIVKVVGSISVGSSSLLVGKAGPMVHTGACVASLLGQGGSTKYHLTCRFLRYFRNDRDRRDLITCGAAAGIAAAFRAPVGGLLFAFEEMVSWSVLFYFSYTLLRQTTTYTCQFLLILSINRWRSALLWRAFFTTAVVAIILRSLIDVCLSGRCGLFGTGGLIMFDVYSESVTYHLVDVPAVLALGVIGGMLGSCFNFILGKVLRLYSLVNEKGVAYKILLAAAVSIFTSCLLFGLPWLGICQPCPTTSSEECPTIGRSGKYKKFQCSADHYNDLASLIFNTSDDAIKNLFSKDSDSEFQYSSIIIFFITCYCLSIICYGVVAPIGLFIPVILTGASYGRLVGMLVGSRTKLDHGLFAVLGAVSLLGGTMRMTVSLSVIILELTNNLLLLPLVMVVSLVSKTVADAFNSNIYDQIMKAKGFPYLESHAEPYMRQLTVGDVVMGPLQIFQGIEKVSNIVHVLRMTRHHGFPVVDEPPFSDSPVLFGIVLRAHLITLLKKKAFLTTTVPIDISAYTELSAGDFAKRGSNNKEDIEDVELTEEEMGMFVDLHLFSNASPYTVVETMSLAKALVLFRQVGLRHMLVIPKVSGRSPVVGILTRHDFMSEHVLGLYPSLVKSKWKRLRIQIPQLSRFFK 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 340517 343348 + Bda004720.1 Bda11g00025 15133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00025 777 SUPERFAMILY CBS-domain pair 571 747 IPR046342 -
Bda11g00025 777 Gene3D - 570 747 IPR046342 -
Bda11g00025 777 Pfam CBS domain 699 747 IPR000644 -
Bda11g00025 777 PANTHER CHLORIDE CHANNEL PROTEIN 265 769 - -
Bda11g00025 777 PANTHER CHLORIDE CHANNEL PROTEIN 10 76 - -
Bda11g00025 777 PANTHER CHLORIDE CHANNEL PROTEIN 90 238 - -
Bda11g00025 777 PRINTS Plant CLC chloride channel signature 277 287 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bda11g00025 777 PRINTS Plant CLC chloride channel signature 295 302 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bda11g00025 777 PRINTS Plant CLC chloride channel signature 419 435 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bda11g00025 777 SUPERFAMILY Clc chloride channel 62 571 IPR014743 -
Bda11g00025 777 Gene3D Clc chloride channel 68 569 - -
Bda11g00025 777 PRINTS Chloride channel signature 467 487 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda11g00025 777 PRINTS Chloride channel signature 118 135 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda11g00025 777 PRINTS Chloride channel signature 213 232 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda11g00025 777 PRINTS Chloride channel signature 149 168 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda11g00025 777 PRINTS Chloride channel signature 499 515 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda11g00025 777 PRINTS Chloride channel signature 517 536 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda11g00025 777 PRINTS Chloride channel signature 555 569 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda11g00025 777 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 10 76 - -
Bda11g00025 777 CDD CBS_pair_voltage-gated_CLC_euk_bac 571 748 - -
Bda11g00025 777 ProSiteProfiles CBS domain profile. 695 756 IPR000644 -
Bda11g00025 777 Pfam Voltage gated chloride channel 106 549 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda11g00025 777 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 265 769 - -
Bda11g00025 777 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 90 238 - -
Bda11g00025 777 SMART cbs_1 699 750 IPR000644 -
Bda11g00025 777 SMART cbs_1 588 641 IPR000644 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01959 Bda11g00025 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01959 Bda-Chr1:55980276 Bda11g00025 Bda-Chr11:340517 0 dispersed
Bda11g00025 Bda-Chr11:340517 Bda11g00061 Bda-Chr11:731868 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00025 K05016 - pop:18099916 1042.72