Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00039 AGGAACTCAGACTCTTGTTTCATTTTGCAGGTCATTTTATCTCCTGATGCAGATCCTCCAGTGCTTAGAATTATGGATTACAACAAATACAGATATGAACTGCAAAAGAAGAAAAAGGAACAGCAGAAGAAAAGTGCTGCAAGTCGAATGGATTTGAAGGAGCTTAAAATGGGTTATAATATTGACCAACATGATTACTCGGTTCGTTTGAAAGCTGCAAGGAAGTTTTTAAAAGATGGAGACAAGGTTAAGGTGATAGTGAACTTAAAAGGTCGTGAAAATGAATTCAGAAACATAGCTATTGAGCTTATCACCCGTTTCCAGAATGATATTGGAGAGCTTGCAACTGAGGAGGCAAGAAACTTCCGAGACAGGAATATCTTCATTGTTTTAGTTCCTAATAAAGCTGTTATACAGAAAGCTCAGGAGCCATCCAAGAGGAAAGATAAGTCGCGGGAAAATGAAGTGTCTGCTGAAATCTTTTCTTCACCCATGGAAGCCAGCGCAGGCCTCGTTGCTGGCTCGCACAACCGAAACGAGCTCGTCGTCATTCACGGCCACGATGAGCCGAAGCCCTTGAGGAATTTGGACGGTCAGGTTTGCGAAATATGTGGAGATGAAGTGGGGATTACGGTGGACGGAGATCTGTTCGTCGCCTGCAATGAATGCGGTTTTCCTGTTTGTCGGCCGTGTTACGAGTATGAGAGAAGAGAAGGGAGCCAGCTCTGGAGTCCGAGAGTTCAAGGCGATGAAGACGAAGAGGATGTGGATGATATTGAGCACGAATTCAACATTGACCATGAGAAGAACAAGCACAAACATCTTGCAGAAGCTATGCTTCATGGAAAGATGAGTTATGGAAGAGGTCCGGAAGAAGATGACAACCCTCAATTACATCAGGTGAGTGGTGAGCTCGCTATATCATCTCATGGCCATGGAGATCAAATGTTGTCATCTTCCCTGCATAAACGAGTGCATCCATATCCTGCTTCCGAACTTGGAAGTGAGCGATGGGACGAGAAGAAAGATGAAGGGTGGAAAGAGAGAACAGATGACTGGAAATTACAACAAGGCAATTTGGGGCCTGAGCCTGATGATGACCCTGACATGGCCATGATTGATGAAGCAAGGCAGCCACTTTCAAGGAAAGTACCAATAGCGTCAAGCAAAGTAAATCCTTATCGGATGATCATTGTGGCTCGGCTTGTTATTCTTGCCTTCTTCCTTCGTTACAGGATTTTAAACCCTGTGCATGATGCATTTGGGCTCTGGTTAACTTCTGTGATATGCGAAATCTGGTTTGCTTTCTCATGGATTCTCGATCAGTTTCCTAAATGGTTTCCAATCGATCGCGAGACTTATCTCGATCGCCTTTCTCTCAGGTATGAACGAGAGGGCGAACCAAACATGCTTGCACCTGTAGATATCTTTGTTAGTACTGTGGATCCATTGAAGGAACCTCCTCTTGTTACAGCTAATACAGTTCTTTCAATCTTAGCCATGGACTACCCAGTAGACAAAATTTCATGTTACATTTCTGATGATGGAGCTTCTATGCTCACCTTTGAAGCCATGTCATTAACAGCCGAATTTGCACGCAAATGGGTACCCTTCTGTAAAAAGTTTTCCATAGAACCTCGAGCCCCTGAAATGTATTTCTCAGAGAAGATGGATTACCTCAAAGATAAAGTCCAGCCTACATTTGTCAAAGAACGTCGAGCAATGAAGAGAGAGTATGAGGAATTCAAAGTTAGAACAAATGCTCTCGTGGCAAAAGCCATGAAAGTTCCTCCAGAAGGATGGATTATGCAAGATGGAATTCCATGGCCTGGAAATAACACCAAGGATCACCCTGGTATGATTCAAGTTTTTCTTGGTCATAGTGGAGGACTCGATGCCGAAGGAAATGAGCTTCCTCGCCTTGTTTATGTTTCTCGTGAAAAAAGGCCTGGTTTCATTCGTGTCTCTGCAGTTCTTACAAATGCTCCTTTTATGCTGAATTTGGATTGTGATCATTACATAAACAACAGCAAGGCAGTGAGAGAAGCCATGTGTTTTCTAATGGATTCTATAATCGGAAAGAAAGTTTGTTATGTGCAGTTCCCACAACGATTCGACGGAATCGACAGGAATGATCGTTATGCCAATAGAAACACAGTCTTCTTTGATATTAATATGAAAGGTCTAGACGGAATTCAAGGTCCTGTATACGTGGGCACTGGATGTGTTTTCAGAAGGCAAGCTTTATATGGATATGAACCTCCAAAGAGGCCAAAGCGCCCAAAGATGATAAGTTGCGACTGTTGCCCGTGTTTCGGACGTCGCAAGAAGCTGAGCAAGTATTCTAAGCATACAGATGGAGATACAGCAGCAGGAATCGAAGATGACAAGGAATTATTGATGTCCCAAATGAACTTTGAGAAGAAATTTGGACAGTCATCAATTTTTGTCACGTCTACTTTAATGGAAGAAGGTGGTGTTCCTCCTTCCTCAAGTCCAGCATCACTGCTTAAAGAGGCAATCCATGTCATCAGTTGCGGCTATGAAGACAAAACAGAATGGGGTATTGAGCTTGGTTGGATTTATGGATCTATCACAGAGGATATCTTAACCGGGTTTAAGATGCATTGTCGCGGATGGAGATCGATATATTGCATGCCTAAAAGGGCTGCCTTTAAGGGAACTGCTCCAATCAACTTGTCTGATAGACTAAACCAGGTGCTTCGTTGGGCTCTTGGCTCCATTGAAATCTTCTTCAGTCGCCATTGTCCTGTTTGGTATGGCTATAAAGGAGGAAAGCTCAAGTGGCTTGAGAGATTTGCTTATGTTAATACAACTGTTTATCCCTTCACATCAATCCCTCTCCTTGCCTACTGCATCCTCCCTGCCATTTGCCTGCTCACGGATAAATTCATCATGCCTCCGATAAGCACATTTGCAAGCCTCTTCTTCATAGCTCTGTTCCTCTCCATCTTCGCAACGGGGATTCTCGAGCTTAGATGGAGCGGAGTGAGCATAGAAGAATGGTGGAGAAATGAGCAATTCTGGGTGATAGGTGGTGTCTCAGCTCATCTCTTTGCAGTCATTCAAGGCCTGCTAAAGGTTTTGGGTGGAATTGACACAAATTTCACTGTTACATCAAAAGCAGTCGACGATGAAGATTTCGGAGAATTATACACATTCAAATGGACGACTCTTTTGATTCCTCCAACGACAATCTTAATCATCAATCTTGTAGGAGTTGTAGCTGGTATTTCAGATGCTATAAACAATGGCTATCAATCTTGGGGGCCTCTATTTGGAAAACTTTTTTTTTCCTTCTGGGTAATTCTTCACCTCTACCCCTTCCTTAAAGGTCTAATGGGTCGGCAAAACCGGACTCCGACGATCGTCGTCATATGGTCAGTTCTCTTGGCTTCCATCTTCTCTCTGCTTTGGGTTAGGATTGATCCTTTTGTGATGAAAACAAAAGGCCCTGATGTGAAGCAGTGTGGAATTAATTGCTGA 3507 43.28 RNSDSCFILQVILSPDADPPVLRIMDYNKYRYELQKKKKEQQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELITRFQNDIGELATEEARNFRDRNIFIVLVPNKAVIQKAQEPSKRKDKSRENEVSAEIFSSPMEASAGLVAGSHNRNELVVIHGHDEPKPLRNLDGQVCEICGDEVGITVDGDLFVACNECGFPVCRPCYEYERREGSQLWSPRVQGDEDEEDVDDIEHEFNIDHEKNKHKHLAEAMLHGKMSYGRGPEEDDNPQLHQVSGELAISSHGHGDQMLSSSLHKRVHPYPASELGSERWDEKKDEGWKERTDDWKLQQGNLGPEPDDDPDMAMIDEARQPLSRKVPIASSKVNPYRMIIVARLVILAFFLRYRILNPVHDAFGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMLTFEAMSLTAEFARKWVPFCKKFSIEPRAPEMYFSEKMDYLKDKVQPTFVKERRAMKREYEEFKVRTNALVAKAMKVPPEGWIMQDGIPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDSIIGKKVCYVQFPQRFDGIDRNDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYEPPKRPKRPKMISCDCCPCFGRRKKLSKYSKHTDGDTAAGIEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPASLLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPVWYGYKGGKLKWLERFAYVNTTVYPFTSIPLLAYCILPAICLLTDKFIMPPISTFASLFFIALFLSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLGGIDTNFTVTSKAVDDEDFGELYTFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFSFWVILHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDVKQCGINC 1168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 481523 492208 + Bda004736.1 Bda11g00039 15147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00039 1168 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 165 1168 - -
Bda11g00039 1168 SUPERFAMILY RING/U-box 185 261 - -
Bda11g00039 1168 Pfam Cellulose synthase 474 1162 IPR005150 GO:0016020|GO:0016760|GO:0030244
Bda11g00039 1168 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 612 753 IPR029044 -
Bda11g00039 1168 MobiDBLite consensus disorder prediction 329 350 - -
Bda11g00039 1168 SUPERFAMILY Translation initiation factor IF3, N-terminal domain 11 43 IPR036787 GO:0003743|GO:0006413
Bda11g00039 1168 Pfam Translation initiation factor IF-3, N-terminal domain 11 41 IPR019814 GO:0003743|GO:0006413
Bda11g00039 1168 Pfam Translation initiation factor IF-3, C-terminal domain 51 134 IPR019815 GO:0006413
Bda11g00039 1168 Gene3D - 46 142 IPR036788 GO:0006413
Bda11g00039 1168 ProSitePatterns Initiation factor 3 signature. 23 36 IPR019813 GO:0003743|GO:0006413
Bda11g00039 1168 MobiDBLite consensus disorder prediction 328 350 - -
Bda11g00039 1168 SUPERFAMILY Nucleotide-diphospho-sugar transferases 488 991 IPR029044 -
Bda11g00039 1168 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 165 1168 - -
Bda11g00039 1168 CDD mRING-HC-C4C4_CesA_plant 199 241 - -
Bda11g00039 1168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 261 IPR013083 -
Bda11g00039 1168 TIGRFAM infC: translation initiation factor IF-3 11 135 IPR001288 GO:0003743|GO:0006413
Bda11g00039 1168 Pfam Zinc-binding RING-finger 191 256 IPR027934 -
Bda11g00039 1168 Gene3D - 9 43 IPR036787 GO:0003743|GO:0006413
Bda11g00039 1168 SUPERFAMILY Translation initiation factor IF3, C-terminal domain 50 135 IPR036788 GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01351 Bda-Chr3:48589614 Bda11g00039 Bda-Chr11:481523 0 dispersed
Bda11g00039 Bda-Chr11:481523 Bda11g00870 Bda-Chr11:8572037 0 dispersed
Bda11g00039 Bda-Chr11:481523 Bda01g00738 Bda-Chr1:34669730 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00039 K10999 - csv:101214842 1880.92