Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda11g00039 | AGGAACTCAGACTCTTGTTTCATTTTGCAGGTCATTTTATCTCCTGATGCAGATCCTCCAGTGCTTAGAATTATGGATTACAACAAATACAGATATGAACTGCAAAAGAAGAAAAAGGAACAGCAGAAGAAAAGTGCTGCAAGTCGAATGGATTTGAAGGAGCTTAAAATGGGTTATAATATTGACCAACATGATTACTCGGTTCGTTTGAAAGCTGCAAGGAAGTTTTTAAAAGATGGAGACAAGGTTAAGGTGATAGTGAACTTAAAAGGTCGTGAAAATGAATTCAGAAACATAGCTATTGAGCTTATCACCCGTTTCCAGAATGATATTGGAGAGCTTGCAACTGAGGAGGCAAGAAACTTCCGAGACAGGAATATCTTCATTGTTTTAGTTCCTAATAAAGCTGTTATACAGAAAGCTCAGGAGCCATCCAAGAGGAAAGATAAGTCGCGGGAAAATGAAGTGTCTGCTGAAATCTTTTCTTCACCCATGGAAGCCAGCGCAGGCCTCGTTGCTGGCTCGCACAACCGAAACGAGCTCGTCGTCATTCACGGCCACGATGAGCCGAAGCCCTTGAGGAATTTGGACGGTCAGGTTTGCGAAATATGTGGAGATGAAGTGGGGATTACGGTGGACGGAGATCTGTTCGTCGCCTGCAATGAATGCGGTTTTCCTGTTTGTCGGCCGTGTTACGAGTATGAGAGAAGAGAAGGGAGCCAGCTCTGGAGTCCGAGAGTTCAAGGCGATGAAGACGAAGAGGATGTGGATGATATTGAGCACGAATTCAACATTGACCATGAGAAGAACAAGCACAAACATCTTGCAGAAGCTATGCTTCATGGAAAGATGAGTTATGGAAGAGGTCCGGAAGAAGATGACAACCCTCAATTACATCAGGTGAGTGGTGAGCTCGCTATATCATCTCATGGCCATGGAGATCAAATGTTGTCATCTTCCCTGCATAAACGAGTGCATCCATATCCTGCTTCCGAACTTGGAAGTGAGCGATGGGACGAGAAGAAAGATGAAGGGTGGAAAGAGAGAACAGATGACTGGAAATTACAACAAGGCAATTTGGGGCCTGAGCCTGATGATGACCCTGACATGGCCATGATTGATGAAGCAAGGCAGCCACTTTCAAGGAAAGTACCAATAGCGTCAAGCAAAGTAAATCCTTATCGGATGATCATTGTGGCTCGGCTTGTTATTCTTGCCTTCTTCCTTCGTTACAGGATTTTAAACCCTGTGCATGATGCATTTGGGCTCTGGTTAACTTCTGTGATATGCGAAATCTGGTTTGCTTTCTCATGGATTCTCGATCAGTTTCCTAAATGGTTTCCAATCGATCGCGAGACTTATCTCGATCGCCTTTCTCTCAGGTATGAACGAGAGGGCGAACCAAACATGCTTGCACCTGTAGATATCTTTGTTAGTACTGTGGATCCATTGAAGGAACCTCCTCTTGTTACAGCTAATACAGTTCTTTCAATCTTAGCCATGGACTACCCAGTAGACAAAATTTCATGTTACATTTCTGATGATGGAGCTTCTATGCTCACCTTTGAAGCCATGTCATTAACAGCCGAATTTGCACGCAAATGGGTACCCTTCTGTAAAAAGTTTTCCATAGAACCTCGAGCCCCTGAAATGTATTTCTCAGAGAAGATGGATTACCTCAAAGATAAAGTCCAGCCTACATTTGTCAAAGAACGTCGAGCAATGAAGAGAGAGTATGAGGAATTCAAAGTTAGAACAAATGCTCTCGTGGCAAAAGCCATGAAAGTTCCTCCAGAAGGATGGATTATGCAAGATGGAATTCCATGGCCTGGAAATAACACCAAGGATCACCCTGGTATGATTCAAGTTTTTCTTGGTCATAGTGGAGGACTCGATGCCGAAGGAAATGAGCTTCCTCGCCTTGTTTATGTTTCTCGTGAAAAAAGGCCTGGTTTCATTCGTGTCTCTGCAGTTCTTACAAATGCTCCTTTTATGCTGAATTTGGATTGTGATCATTACATAAACAACAGCAAGGCAGTGAGAGAAGCCATGTGTTTTCTAATGGATTCTATAATCGGAAAGAAAGTTTGTTATGTGCAGTTCCCACAACGATTCGACGGAATCGACAGGAATGATCGTTATGCCAATAGAAACACAGTCTTCTTTGATATTAATATGAAAGGTCTAGACGGAATTCAAGGTCCTGTATACGTGGGCACTGGATGTGTTTTCAGAAGGCAAGCTTTATATGGATATGAACCTCCAAAGAGGCCAAAGCGCCCAAAGATGATAAGTTGCGACTGTTGCCCGTGTTTCGGACGTCGCAAGAAGCTGAGCAAGTATTCTAAGCATACAGATGGAGATACAGCAGCAGGAATCGAAGATGACAAGGAATTATTGATGTCCCAAATGAACTTTGAGAAGAAATTTGGACAGTCATCAATTTTTGTCACGTCTACTTTAATGGAAGAAGGTGGTGTTCCTCCTTCCTCAAGTCCAGCATCACTGCTTAAAGAGGCAATCCATGTCATCAGTTGCGGCTATGAAGACAAAACAGAATGGGGTATTGAGCTTGGTTGGATTTATGGATCTATCACAGAGGATATCTTAACCGGGTTTAAGATGCATTGTCGCGGATGGAGATCGATATATTGCATGCCTAAAAGGGCTGCCTTTAAGGGAACTGCTCCAATCAACTTGTCTGATAGACTAAACCAGGTGCTTCGTTGGGCTCTTGGCTCCATTGAAATCTTCTTCAGTCGCCATTGTCCTGTTTGGTATGGCTATAAAGGAGGAAAGCTCAAGTGGCTTGAGAGATTTGCTTATGTTAATACAACTGTTTATCCCTTCACATCAATCCCTCTCCTTGCCTACTGCATCCTCCCTGCCATTTGCCTGCTCACGGATAAATTCATCATGCCTCCGATAAGCACATTTGCAAGCCTCTTCTTCATAGCTCTGTTCCTCTCCATCTTCGCAACGGGGATTCTCGAGCTTAGATGGAGCGGAGTGAGCATAGAAGAATGGTGGAGAAATGAGCAATTCTGGGTGATAGGTGGTGTCTCAGCTCATCTCTTTGCAGTCATTCAAGGCCTGCTAAAGGTTTTGGGTGGAATTGACACAAATTTCACTGTTACATCAAAAGCAGTCGACGATGAAGATTTCGGAGAATTATACACATTCAAATGGACGACTCTTTTGATTCCTCCAACGACAATCTTAATCATCAATCTTGTAGGAGTTGTAGCTGGTATTTCAGATGCTATAAACAATGGCTATCAATCTTGGGGGCCTCTATTTGGAAAACTTTTTTTTTCCTTCTGGGTAATTCTTCACCTCTACCCCTTCCTTAAAGGTCTAATGGGTCGGCAAAACCGGACTCCGACGATCGTCGTCATATGGTCAGTTCTCTTGGCTTCCATCTTCTCTCTGCTTTGGGTTAGGATTGATCCTTTTGTGATGAAAACAAAAGGCCCTGATGTGAAGCAGTGTGGAATTAATTGCTGA | 3507 | 43.28 | RNSDSCFILQVILSPDADPPVLRIMDYNKYRYELQKKKKEQQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELITRFQNDIGELATEEARNFRDRNIFIVLVPNKAVIQKAQEPSKRKDKSRENEVSAEIFSSPMEASAGLVAGSHNRNELVVIHGHDEPKPLRNLDGQVCEICGDEVGITVDGDLFVACNECGFPVCRPCYEYERREGSQLWSPRVQGDEDEEDVDDIEHEFNIDHEKNKHKHLAEAMLHGKMSYGRGPEEDDNPQLHQVSGELAISSHGHGDQMLSSSLHKRVHPYPASELGSERWDEKKDEGWKERTDDWKLQQGNLGPEPDDDPDMAMIDEARQPLSRKVPIASSKVNPYRMIIVARLVILAFFLRYRILNPVHDAFGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMLTFEAMSLTAEFARKWVPFCKKFSIEPRAPEMYFSEKMDYLKDKVQPTFVKERRAMKREYEEFKVRTNALVAKAMKVPPEGWIMQDGIPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDSIIGKKVCYVQFPQRFDGIDRNDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYEPPKRPKRPKMISCDCCPCFGRRKKLSKYSKHTDGDTAAGIEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPASLLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPVWYGYKGGKLKWLERFAYVNTTVYPFTSIPLLAYCILPAICLLTDKFIMPPISTFASLFFIALFLSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLGGIDTNFTVTSKAVDDEDFGELYTFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFSFWVILHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDVKQCGINC | 1168 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 481523 | 492208 | + | Bda004736.1 | Bda11g00039 | 15147 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda11g00039 | 1168 | PANTHER | CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] | 165 | 1168 | - | - | |
Bda11g00039 | 1168 | SUPERFAMILY | RING/U-box | 185 | 261 | - | - | |
Bda11g00039 | 1168 | Pfam | Cellulose synthase | 474 | 1162 | IPR005150 | GO:0016020|GO:0016760|GO:0030244 | |
Bda11g00039 | 1168 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 612 | 753 | IPR029044 | - | |
Bda11g00039 | 1168 | MobiDBLite | consensus disorder prediction | 329 | 350 | - | - | |
Bda11g00039 | 1168 | SUPERFAMILY | Translation initiation factor IF3, N-terminal domain | 11 | 43 | IPR036787 | GO:0003743|GO:0006413 | |
Bda11g00039 | 1168 | Pfam | Translation initiation factor IF-3, N-terminal domain | 11 | 41 | IPR019814 | GO:0003743|GO:0006413 | |
Bda11g00039 | 1168 | Pfam | Translation initiation factor IF-3, C-terminal domain | 51 | 134 | IPR019815 | GO:0006413 | |
Bda11g00039 | 1168 | Gene3D | - | 46 | 142 | IPR036788 | GO:0006413 | |
Bda11g00039 | 1168 | ProSitePatterns | Initiation factor 3 signature. | 23 | 36 | IPR019813 | GO:0003743|GO:0006413 | |
Bda11g00039 | 1168 | MobiDBLite | consensus disorder prediction | 328 | 350 | - | - | |
Bda11g00039 | 1168 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 488 | 991 | IPR029044 | - | |
Bda11g00039 | 1168 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 165 | 1168 | - | - | |
Bda11g00039 | 1168 | CDD | mRING-HC-C4C4_CesA_plant | 199 | 241 | - | - | |
Bda11g00039 | 1168 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 184 | 261 | IPR013083 | - | |
Bda11g00039 | 1168 | TIGRFAM | infC: translation initiation factor IF-3 | 11 | 135 | IPR001288 | GO:0003743|GO:0006413 | |
Bda11g00039 | 1168 | Pfam | Zinc-binding RING-finger | 191 | 256 | IPR027934 | - | |
Bda11g00039 | 1168 | Gene3D | - | 9 | 43 | IPR036787 | GO:0003743|GO:0006413 | |
Bda11g00039 | 1168 | SUPERFAMILY | Translation initiation factor IF3, C-terminal domain | 50 | 135 | IPR036788 | GO:0006413 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g01351 | Bda-Chr3:48589614 | Bda11g00039 | Bda-Chr11:481523 | 0 | dispersed | |
Bda11g00039 | Bda-Chr11:481523 | Bda11g00870 | Bda-Chr11:8572037 | 0 | dispersed | |
Bda11g00039 | Bda-Chr11:481523 | Bda01g00738 | Bda-Chr1:34669730 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda11g00039 | K10999 | - | csv:101214842 | 1880.92 |