Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00046 ATGGCCGGAGATGGAGTTTTTGCAGAGCTGTTGGACGGGGAAGTGTACAAGTACTATTCTGAGGGAGAATGGAAGAAATCTTCATCGGGGAAAAGCGTTTCCATCATCAACCCCACTACTCGAAAGACTGAGTACAGGGTTCAAGCTTGTACACAAGAAGAGGTGAATAAAGTGATGGAAATATCAAAAGCTGCCCAGAAATCTTGGGCCAAGACTCCATTATGGAGGAGAGCAGAGCTTCTTCACAAAGCAGCTGCCATACTCAAAGATCACAGAGCCAAAATAGCAGAGTGTCTGGTTAAAGAAATAGCAAAACCAGCAAAAGATGCTGTGACAGAGGTTGTGAGGTCTGGAGATCTTATTTCTTACACTGCTGAAGAGGGAGTTAGGATTTTGGGAGAGGGGAAGTTTTTAGTCTCTGATAGTTTCCCTGGAAATGAGAGGACAAAATACTGCCTTACTTCAAAGATCCCACTGGGTGTAGTTTTAGCCATTCCGCCGTTTAATTATCCCGTCAACTTGGCTGTCTCAAAAATAGCTCCTGCACTGATAGCCGGAAACTCACTCGTGCTTAAACCTCCGACTCAGGGAGCTGTTTCTGCCCTTCACATGGTGCATTGCTTTCATTTGGCTGGATTTCCTAAAGGCCTTATCAATTGTGTCACCGGTAAAGGCTCTGAGATCGGTGATTTCCTTACCATGCATCCGGGCGTTAATTGTATTAGCTTCACAGGTGGGGACACAGGCGTCGCAATTTCGAAGAAGGCGGGAATGATACCTCTTCAGATGGAGTTGGGAGGAAAAGATGCCTGTATTGTGCTTGAGGATGCAGACTTAGATTTAGTAGCTGCAAACATAATAAAAGGAGGTTTCTCCTACAGTGGTCAAAGGTGTACGGCTGTTAAGGTTGTCTTGGTGATGGAATCCGTTGCCGATGCTTTGGTCGAGAAAGTGAATGCCAGAGTGGCAAAATTGACGGTAGGACCACCGGATGACGACTGCGATATTACTCCGGTCGTGACCGAGTCATCTGCTAATTACATTGAAGGGTTGGTTATGGACGCAAAAGAGAAAGGGGCGACATTTTGCCAAGAGTACAAGAGAGAAGGCAACTTAATATGGCCATTGTTGTTAGATAATGTCAGGCCGGACATGAGGATCGCATGGGAAGAACCATTTGGACCTGTTTTGCCGGTTATTCGAATAAGTACCGTCGAAGAGGGAATTCACCATTGTAACGCAAGTAATTTCGGACTCCAGGGATGTGTGTTCACAAAGGATGTGAACAAAGCCATGCTAATCAGCGATGCAATGGAGACTGGAACCGTTCAAATCAACTCGGCCCCGGCACGAGGGCCCGACCATTTCCCGTTCCAGGGTATAAAAGACAGTGGAATTGGGTCGCAAGGCATCACCAACAGCATCAACATGATGACCAAGGTGAAAACAACTGTCATTAACTTACCATCCCCCTCTTATACCATGGGTTAA 1491 46.21 MAGDGVFAELLDGEVYKYYSEGEWKKSSSGKSVSIINPTTRKTEYRVQACTQEEVNKVMEISKAAQKSWAKTPLWRRAELLHKAAAILKDHRAKIAECLVKEIAKPAKDAVTEVVRSGDLISYTAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVSALHMVHCFHLAGFPKGLINCVTGKGSEIGDFLTMHPGVNCISFTGGDTGVAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVNARVAKLTVGPPDDDCDITPVVTESSANYIEGLVMDAKEKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRISTVEEGIHHCNASNFGLQGCVFTKDVNKAMLISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPSPSYTMG 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 551020 554075 - Bda004745.1 Bda11g00046 15154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00046 496 CDD ALDH_F11_NP-GAPDH 15 487 - -
Bda11g00046 496 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491
Bda11g00046 496 PANTHER ALDEHYDE DEHYDROGENASE 1 496 - -
Bda11g00046 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620
Bda11g00046 496 PANTHER NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 1 496 - -
Bda11g00046 496 SUPERFAMILY ALDH-like 15 487 IPR016161 GO:0016491
Bda11g00046 496 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491
Bda11g00046 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491
Bda11g00046 496 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00046 Bda-Chr11:551020 Bda13g01096 Bda-Chr13:13673350 4.57E-158 dispersed
Bda15g00837 Bda-Chr15:12713042 Bda11g00046 Bda-Chr11:551020 3.44E-21 dispersed
Bda11g00046 Bda-Chr11:551020 Bda06g00234 Bda-Chr6:4124204 3.97E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00046 K00131 - sly:101262732 918.302