Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00061 ATGTCCTTCACAATAACTAATGGAATCAGCGAAGAAAGAGACTCTTTCATCGTCCCCTTACTTTCTTCCCAGAGATCCGCCCTTAACTGTTCTTCCCAGGTCGCCATTGTCGGGTCTAAAGTCTGCCCCATCGAGAGCCTCGACTACGAGATTTTTGAGAACGAAATCTTCAAACAGGATTGGAGGAGCCGTCGGAAGTTGCAGATTTTTGAGTATACATTTATGAAGTGGTTTTTGTGCTTTCTGATTGGTCTCATCGTTAGCGTTATTGGCTTCTGCAATAATCTCTCCGTCGAGAACATTGCTGGTGTTAAATTGGTCGCCACCTCCAATTTGATGCTCAAGAACAGGTATTGGATGGCGTTTCTTGTTTTTTTAATTTCGAATTTGGTTCTCACTCTATTTGCAGCTCTGATCACGATATTGGTCTCCCCGGCCGCGGCCGGATCGGGTATTCCGGAAGTCAAAGCCTATTTGAATGGCGTTGACGCGCCGAGAATTTTTTCGATAAAAACACTGATTGTGAAGGTGGTTGGCAGCATTTCGGTGGGATCGTCGTCTTTGCTAGTAGGAAAGGCGGGGCCTATGGTGCATACCGGTGCTTGCGTTGCATCTCTGCTAGGTCAGGGCGGGTCGACGAAATATCATTTGACATGTAGATTTCTTCGGTATTTCAGGAACGACAGAGACCGACGCGATCTCATAACGTGCGGGGCAGCTGCCGGAATCGCAGCTGCTTTTCGTGCGCCGGTGGGTGGTTTGCTCTTCGCTTTCGAAGAGATGGTATCTTGGTGGCGGAGTGCCCTTTTGTGGCGGGCATTTTTCACGACGGCCGTCGTTGCGATTATATTACGATCGTTAATCGATGTTTGCTTAAGTGGAAGATGTGGATTATTTGGAACTGGAGGTCTGATAATGTTTGATGTGTATTCAGAATCTGTAACATATCATCTAGTGGATGTTCCTGCGGTCCTCGCCCTCGGAGTCATCGGAGGGATGCTCGGAAGCTTCTTCAACTTCATTTTAGGCAAAGTTCTTCGACTTTACAGTCTGGTAAACGAGAAAGGCGTTGCTTACAAGATTCTGCTCGCCGCCGCCGTCTCCATTTTCACATCCTGTCTTCTTTTTGGATTACCGTGGCTCGGAACTTGCCAGCCTTGCCCGACGACCTCATCGGAAGAGTGTCCGACAATCGGACGGTTAGGGAAATACAATAAATTTCAATGTTCGGCCGATCGCTACAACGATCTCGCTAGTCTCATATTCAACACAAGCGACGACGCGATTAAAAATCTCTTCAGCAAAGATTCCGACTCGGAGTTTCAATACTCGTCGATCATCATATTTTTCATCACCTGCTATTGCTTAAGCATTATCAGCTATGGAGTTGTGGCTCCGATCGGTCTGTTTATCCCCGTCATCCTGACCGGAGCTTCCTACGGGCGTTTGGTCGGGATGTTAGTGGGTTCGCACACGAAGCTCGACCACGGGCTTTTCGCCGTACTCGGAGCGGTCTCGTTGCTCGGAGGTACGATGAGAATGACGGTGTCTCTCTCCGTCATCATCCTCGAACTAACCAACAATCTCTTATTGCTTCCTCTGATAATGGTGGTTTCTCTCGTCTCCAAAACCGTCGCCGATGCGTTCAACAGCAATATCTACGACCAAATCATGAAAACCAAAGGGTTTCCATATCTCGAGTCCCATGCCGAGCCGTACATGCGGCAGCTGACGGTCGGCGACGTCGTCATGGGTCCGCTTCAGATATTTCAAGGGATTGAGAGAGTGAGTAACATTGTACATGTTCTTCGAATGACAAGACATCATGGTTTTCCTGTCGTCGACGAGCCTCCATTCTCCGATTCCCCTGTTCTGTTCGGAATTGTTCTTCGAGCCCATTTGATCACGTTGTTGAAGAAGAAAGCTTTCTTAACAACGACTGTGCCGATCGATATTAGTGCTTATACGCAATTATCAGCCGGAGATTTCGCGAAGAGGGGCTCGAATAACAAAGAGGATATCGAGGACGTCGAATTGACCGAGGAAGAGATGGGGATGTTCGTCGATCTCCATTTGTTCAGTAATGCTTCGCCTTATACGGTTGTGGAAACGATGTCATTAGCGAAAGCTCTGGTTCTTTTCCGGCAAGTTGGATTAAGACATATGCTCGTCATTCCAAAAGTTTCCGGCAGATCGCCGGTCGTGGGTATATTAACGCGGCACGATTTCATGTCGGAACACGTACTGGGTTTGTATCCTTCGCTGGTGAAAAGCAAGTGGAAGAGACTCAGAATCCAGATTCCGCAGTTGAATAGATTCTTCAAATGA 2328 47.81 MSFTITNGISEERDSFIVPLLSSQRSALNCSSQVAIVGSKVCPIESLDYEIFENEIFKQDWRSRRKLQIFEYTFMKWFLCFLIGLIVSVIGFCNNLSVENIAGVKLVATSNLMLKNRYWMAFLVFLISNLVLTLFAALITILVSPAAAGSGIPEVKAYLNGVDAPRIFSIKTLIVKVVGSISVGSSSLLVGKAGPMVHTGACVASLLGQGGSTKYHLTCRFLRYFRNDRDRRDLITCGAAAGIAAAFRAPVGGLLFAFEEMVSWWRSALLWRAFFTTAVVAIILRSLIDVCLSGRCGLFGTGGLIMFDVYSESVTYHLVDVPAVLALGVIGGMLGSFFNFILGKVLRLYSLVNEKGVAYKILLAAAVSIFTSCLLFGLPWLGTCQPCPTTSSEECPTIGRLGKYNKFQCSADRYNDLASLIFNTSDDAIKNLFSKDSDSEFQYSSIIIFFITCYCLSIISYGVVAPIGLFIPVILTGASYGRLVGMLVGSHTKLDHGLFAVLGAVSLLGGTMRMTVSLSVIILELTNNLLLLPLIMVVSLVSKTVADAFNSNIYDQIMKTKGFPYLESHAEPYMRQLTVGDVVMGPLQIFQGIERVSNIVHVLRMTRHHGFPVVDEPPFSDSPVLFGIVLRAHLITLLKKKAFLTTTVPIDISAYTQLSAGDFAKRGSNNKEDIEDVELTEEEMGMFVDLHLFSNASPYTVVETMSLAKALVLFRQVGLRHMLVIPKVSGRSPVVGILTRHDFMSEHVLGLYPSLVKSKWKRLRIQIPQLNRFFK 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 731868 734695 + Bda004762.1 Bda11g00061 15169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00061 775 Gene3D Clc chloride channel 68 567 - -
Bda11g00061 775 PRINTS Chloride channel signature 240 259 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda11g00061 775 PRINTS Chloride channel signature 145 162 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda11g00061 775 PRINTS Chloride channel signature 465 485 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda11g00061 775 PRINTS Chloride channel signature 497 513 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda11g00061 775 PRINTS Chloride channel signature 553 567 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda11g00061 775 PRINTS Chloride channel signature 176 195 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda11g00061 775 PRINTS Chloride channel signature 515 534 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda11g00061 775 SUPERFAMILY Clc chloride channel 54 569 IPR014743 -
Bda11g00061 775 CDD CBS_pair_voltage-gated_CLC_euk_bac 569 746 - -
Bda11g00061 775 Pfam CBS domain 697 745 IPR000644 -
Bda11g00061 775 Gene3D - 568 745 IPR046342 -
Bda11g00061 775 PANTHER CHLORIDE CHANNEL PROTEIN 10 767 - -
Bda11g00061 775 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 10 767 - -
Bda11g00061 775 SMART cbs_1 586 639 IPR000644 -
Bda11g00061 775 SMART cbs_1 697 748 IPR000644 -
Bda11g00061 775 Pfam Voltage gated chloride channel 133 547 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bda11g00061 775 SUPERFAMILY CBS-domain pair 569 745 IPR046342 -
Bda11g00061 775 PRINTS Plant CLC chloride channel signature 417 433 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bda11g00061 775 PRINTS Plant CLC chloride channel signature 275 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bda11g00061 775 PRINTS Plant CLC chloride channel signature 261 269 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bda11g00061 775 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bda11g00061 775 PRINTS Plant CLC chloride channel signature 293 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bda11g00061 775 ProSiteProfiles CBS domain profile. 693 754 IPR000644 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00188 Bda-Chr6:2554598 Bda11g00061 Bda-Chr11:731868 0 dispersed
Bda07g01397 Bda-Chr7:16769406 Bda11g00061 Bda-Chr11:731868 0 dispersed
Bda08g00422 Bda-Chr8:4274229 Bda11g00061 Bda-Chr11:731868 0 dispersed
Bda11g00025 Bda-Chr11:340517 Bda11g00061 Bda-Chr11:731868 0 transposed
Bda01g01959 Bda-Chr1:55980276 Bda11g00061 Bda-Chr11:731868 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00061 K05016 - pop:18099916 1154.04