Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00093 GGAGAAAGGAAGAACATTAATTCAGAATTGTGGCATGCTTGCGCTGGACCTCTAGTTTCTCTACCTCCAGTTGGGAGCCTTGTGGTTTACTTTCCTCAAGGCCACAGTGAGCAGGTTGCAGCATCGATCCATAAGGAGACTGATTTCGTGCCCAACTATCCAAACCTTCCTTCCAAGTTGATTTGTATGCTTCATAACGTCACTTTACATGCTGATCTCGAAACTGATGAAGTTTATGCACAAATGACCCTTCAACCTGTATCCAAATATGACAAGGAAGCTTTACTGGCATCTGATATAGGCCTCAAGCAAAGCCGGCAACCTACTGAGTTCTTCTGCAAAACTCTTACTGCTAGTGACACTAGTACCCATGGTGGCTTTTCCGTTCCTCGTCGGGCTGCCGAGAAGATATTTCCACCACTAGATTACACCATGCAACCCCCTGCTCAGGAGCTAGTTGCTAGAGATCTGCACGATACTTCTTGGGCTTTCAGACATATTTATCGCGGCCAACCGAAAAGACATCTGCTGACCACCGGCTGGAGTGTTTTTGTTAGTACAAAACGTCTTTTTGCTGGAGATTCGGTTCTTTTCATACGAGATGAAAAATCACAGCTTCTTTTAGGCATACGACGGTCTAATAAGCAGCAGCCAGCTCTTTCTTCGTCTGTAATTTCTAGTGACAGCATGCACATTGGAATTCTTGCTTCGGCAGCTCATGCAGCCGCAAATAACAGTCCATTTACTATATTTTATAATCCTAGGGCTAGTCCTTCAGAATTTGTAGTTCCTTTGGCCAAATATAATAAAGCAATGTACACCCAAGTTTCCCTTGGCATGCGATTTCGAATGATGTTCGAAACCGAGGAGTTAGGAGTACGCAGATACATGGGTACTATCACGGGTATAAGCGACTTGGATTCAGTCCGATGGAAAAGTTCACAATGGCGTAATCTTCAGGTTGGATGGGATGAGTCGGCAGCAGGTGCAAGGCCAACGCGGGTTTCAATATGGGAAGTCGAGCCCGTTATAACGCCTTTCTACATATGCCCGCCACCATTTTTCCGACCCAAATTGCCCAAACAACCGGGAATGGCAGATGATGAATCTGAAATCGAGAATGCTTTCAAGAGAGCCATGCCGTGGCTCGGGGACGACTTTAGCGTGAAGGACAGCCAGAGTCCGATTTTTCCCGGGCTAAGTTTGGTGCAGTGGATGAGCATGCAGCAAAGTAATCAATTTCCGTCTGCTCAATCCGGGTTTTTACCATCTATGCTCTCTCCAAACGCCCATTCGCTGCATAACAGTTTAAGCACTGATGATCCATCTAAATTATTGAGTTTTCAAACTCCAGCGCTATCTCCGCCTACTCCTCCATATAACAAACCTAATCAGCAGGGCCAAGTTATTCAGTTGCAGCAGCCAGCGTCTGCCTGGCCTCAACAGCAACAACCACAGCCGCAGCCGCAGCCGCAGCCGCAGCAGCAGCCTCAGCCTCAGCCACAGCAATTACTGCAGATTCCCACCAGCCAACAGCTACAACGGCAGCAACCTCAGCAATTAGCACATATTCAACCACAACACCAGCAAAACAAGCAAGTTCTGCCACTACAACAGCTGACCCAACAATCTCCTTCAAATAATGGTGTTCTTGTTGGTAACCAGATCCAAAATCAAACTTTGCAGCAGCCATTGCTGTACTCCCAGCTTCAGCTACAGCAGTTGATGGCCGGCAATGGCCAAACCCAGCAGCACAGTATGAATAAATCATTTCAGATGACATCTTTACCGCAAGATTCTTTTTTTCAGCAACAAACGGATCAGCAAACGACTCTCGTTCCTCTGCATCAGCAGCCAGCACAGTTACAACAGTCGCAACTTCAGTTACTACAGCCGGGGCTTTCGCAGAAAGCTCAGCAGAACCAACCAGTCCAACAATTGGCTCAACAGATGACATCAGACCAGCAACTTCAGCTTCAGATGTTACAGAAATTACAGCAGCAGCAGCAGCAGGTGCTCTTTCCTGCAAACCCATTATTACAGTCTCAGGCAGTTCAGCTACAGCAGGGCCAGGGCCAGGGCCATCAGCAAAACCAGTATTCATCACAGCTGCCACTGTCTCATCTTCAGCAACAACAAAACACCAATGGCTTTTCAACTTCAGGCCATCTCCAGTCTCAACAGGCTCCCATAAACCAGCCCCAACCCCAGCCAAAGGGCCAATTCAAGCCGCTCAGTGCCATGAGAGCTCAGTCTATGACAGATGGTGATGCTCCATCTTGTTCAACTTCACCTTCCTCCAATTATTGCCATGTTCCAGCTTCAAACCTTTTGAACAGAAGGCAAGGACCAGTCACTCAAGCTGAATGTTCAGTAATCGAGCCTTCGAACAACCCACTTCAGGAACTTCAAAGTAAATACGATTCCCGAATCAAACATGAGTTTCCGGGTGAAAAAGGATCCGATCTGATTAAATTTAAAAGCACAGTCAATGATCAGTTAGAAGCATCCTCTTCCGGGACATCATATTGTCTAGATGCCGGGACCATACGGCAGCCATTCTCACTCCCCGTTTGTTTAGACAACGATGTCCAATCCCATCACCGGATGAACATTCCATTCACGAGTAACATCGACGGCTTGATGCCAGATACTTCGCTATCAAGAGAATACGACTCCCAAAACTTACTTTCTAACTACAGCAGTATTCCGAGAGATATCGAAACGGAGCTGTCGAGCGCTCCTATCAGTCCACTTCCATTTGGGGTGCCAAACTTGCCTCTTAAGCCCGGTTGCTCAAATGACGTCCCCATAAGCGATTCTGGAGCCATGGGCAGTGGACTGTGGGCAAATCACAATCAACCGACGCGGAGTTATACGAAGGTTCAAAAACGCGGATCTGTAGGGAGATGTATCGACGTGACTCGATACAGAGGATATGGAGAGCTAAGGTTTGATCTTGCTCGCATGTTCGGGATTGAAGGGCAGCTTGAAGATCCTCAGAGAACTGATTGGAAGCTCGTTTACGTAGATCATGAAAGCGACATACTTCTTGTCGGGGATGATCCGTGGGAAGAGTTCGTAAGCTGTGTTCAGAGCATAAAGATCCTTTCGTCGGCCGAAGTACAGCAAATGAGCTTGGACGGGGATTTGGGCCAAATTCAAATTCCAAATCACACATGCAGTGGGACGGACAGCGAAAACGCGTGGAGAGACGACCACTCTGCAGCCTCCTTCAATCGA 3243 47.46 GERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASIHKETDFVPNYPNLPSKLICMLHNVTLHADLETDEVYAQMTLQPVSKYDKEALLASDIGLKQSRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYTMQPPAQELVARDLHDTSWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRSNKQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEELGVRRYMGTITGISDLDSVRWKSSQWRNLQVGWDESAAGARPTRVSIWEVEPVITPFYICPPPFFRPKLPKQPGMADDESEIENAFKRAMPWLGDDFSVKDSQSPIFPGLSLVQWMSMQQSNQFPSAQSGFLPSMLSPNAHSLHNSLSTDDPSKLLSFQTPALSPPTPPYNKPNQQGQVIQLQQPASAWPQQQQPQPQPQPQPQQQPQPQPQQLLQIPTSQQLQRQQPQQLAHIQPQHQQNKQVLPLQQLTQQSPSNNGVLVGNQIQNQTLQQPLLYSQLQLQQLMAGNGQTQQHSMNKSFQMTSLPQDSFFQQQTDQQTTLVPLHQQPAQLQQSQLQLLQPGLSQKAQQNQPVQQLAQQMTSDQQLQLQMLQKLQQQQQQVLFPANPLLQSQAVQLQQGQGQGHQQNQYSSQLPLSHLQQQQNTNGFSTSGHLQSQQAPINQPQPQPKGQFKPLSAMRAQSMTDGDAPSCSTSPSSNYCHVPASNLLNRRQGPVTQAECSVIEPSNNPLQELQSKYDSRIKHEFPGEKGSDLIKFKSTVNDQLEASSSGTSYCLDAGTIRQPFSLPVCLDNDVQSHHRMNIPFTSNIDGLMPDTSLSREYDSQNLLSNYSSIPRDIETELSSAPISPLPFGVPNLPLKPGCSNDVPISDSGAMGSGLWANHNQPTRSYTKVQKRGSVGRCIDVTRYRGYGELRFDLARMFGIEGQLEDPQRTDWKLVYVDHESDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGQIQIPNHTCSGTDSENAWRDDHSAASFNR 1081
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1081549 1087087 + Bda033006 Bda11g00093 15201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00093 1081 MobiDBLite consensus disorder prediction 707 740 - -
Bda11g00093 1081 SUPERFAMILY DNA-binding pseudobarrel domain 102 241 IPR015300 -
Bda11g00093 1081 MobiDBLite consensus disorder prediction 1062 1081 - -
Bda11g00093 1081 Gene3D - 109 213 IPR015300 -
Bda11g00093 1081 MobiDBLite consensus disorder prediction 482 498 - -
Bda11g00093 1081 MobiDBLite consensus disorder prediction 707 765 - -
Bda11g00093 1081 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Bda11g00093 1081 Gene3D - 953 1046 - -
Bda11g00093 1081 ProSiteProfiles PB1 domain profile. 957 1050 IPR000270 GO:0005515
Bda11g00093 1081 Pfam AUX/IAA family 958 1043 IPR033389 -
Bda11g00093 1081 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 1071 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bda11g00093 1081 CDD B3_DNA 111 212 IPR003340 GO:0003677
Bda11g00093 1081 MobiDBLite consensus disorder prediction 463 481 - -
Bda11g00093 1081 Pfam Auxin response factor 238 320 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bda11g00093 1081 MobiDBLite consensus disorder prediction 499 532 - -
Bda11g00093 1081 MobiDBLite consensus disorder prediction 432 532 - -
Bda11g00093 1081 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Bda11g00093 1081 PANTHER AUXIN RESPONSE FACTOR 19 2 1071 - -
Bda11g00093 1081 SMART B3_2 112 214 IPR003340 GO:0003677
Bda11g00093 1081 MobiDBLite consensus disorder prediction 432 451 - -
Bda11g00093 1081 Gene3D - 275 345 - -
Bda11g00093 1081 SUPERFAMILY CAD & PB1 domains 954 1035 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g01003 Bda-Chr9:39937064 Bda11g00093 Bda-Chr11:1081549 5.00E-57 dispersed
Bda11g00093 Bda-Chr11:1081549 Bda12g00280 Bda-Chr12:3024876 1.64E-29 dispersed
Bda11g00093 Bda-Chr11:1081549 Bda02g00770 Bda-Chr2:48437939 1.38E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16561 PF02362 B3 3.00E-19 CL0405 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00093 K14486 - rcu:8259066 1367.44