Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00143 ATGGTGCAATCAAAGAAGTTCAGAGGAGTCAGGCAGAGACACTGGGGCTCATGGGTATCAGAAATTCGCCATCCCCTTGCTGTAATGAAAAGAAGGGTTTGGCTTGGAACTTTTGAGACCGCAGAAGAAGCAGCCAGAGCTTACGATCAAGCAGCCATTTTAATGAGTGGAAGAAACGCGAAGACGAATTTTCCAGTCCCTCAAACTCCCACAGGCGATTCTGAGAAAAACAAACTTTCGCCATTATCTCCCAAGAGGTTATCAGAAATTCTTCACCAAAAGCTGAGAAAATGCAGCAAAACACCTTCTCCTTCAATGACTTGTTTGAGGCTAGACAATGAAAATTCCCATATCGGAGTTTGGCAAAAGCGGGCCGGGCAAAGTTCAAACTCCAATTGGGTAATGACTGTTGAGCTTGGAAAGAAGGAATCTGAACAGAATATTTCGTCTTCTTCATCATCATCGTCTTTTCATCAGCTTCCGCCATTGGAGGTAAACCCTGAGCTTCCCAGAGAGATAAATGAAGAAGAAAAACTTGCACTGCAAATGATAGAGGAACTGCTCATAGGAAACAGTCCAAACCCTTCATTTGAGTGTCAAGAAGATCCAGGTCCTAAATTTTTTACCTGTGATTGA 636 43.24 MVQSKKFRGVRQRHWGSWVSEIRHPLAVMKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPVPQTPTGDSEKNKLSPLSPKRLSEILHQKLRKCSKTPSPSMTCLRLDNENSHIGVWQKRAGQSSNSNWVMTVELGKKESEQNISSSSSSSSFHQLPPLEVNPELPREINEEEKLALQMIEELLIGNSPNPSFECQEDPGPKFFTCD 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1883290 1884053 - Bda004855.1 Bda11g00143 15251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00143 211 Gene3D AP2/ERF domain 5 66 IPR036955 GO:0003700|GO:0006355
Bda11g00143 211 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Bda11g00143 211 PRINTS Ethylene responsive element binding protein signature 31 47 IPR001471 GO:0003700|GO:0006355
Bda11g00143 211 SUPERFAMILY DNA-binding domain 6 66 IPR016177 GO:0003677
Bda11g00143 211 MobiDBLite consensus disorder prediction 61 78 - -
Bda11g00143 211 MobiDBLite consensus disorder prediction 144 168 - -
Bda11g00143 211 SMART rav1_2 6 71 IPR001471 GO:0003700|GO:0006355
Bda11g00143 211 MobiDBLite consensus disorder prediction 144 161 - -
Bda11g00143 211 MobiDBLite consensus disorder prediction 61 81 - -
Bda11g00143 211 Pfam AP2 domain 6 56 IPR001471 GO:0003700|GO:0006355
Bda11g00143 211 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 199 - -
Bda11g00143 211 CDD AP2 5 66 IPR001471 GO:0003700|GO:0006355
Bda11g00143 211 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 199 - -
Bda11g00143 211 ProSiteProfiles AP2/ERF domain profile. 6 65 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01833 Bda11g00143 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01850 Bda-Chr1:54597473 Bda11g00143 Bda-Chr11:1883290 3.11E-113 dispersed
Bda02g00187 Bda-Chr2:36024788 Bda11g00143 Bda-Chr11:1883290 9.58E-83 dispersed
Bda03g00069 Bda-Chr3:741933 Bda11g00143 Bda-Chr11:1883290 5.21E-76 dispersed
Bda04g00139 Bda-Chr4:3414228 Bda11g00143 Bda-Chr11:1883290 3.99E-85 dispersed
Bda11g00143 Bda-Chr11:1883290 Bda12g00663 Bda-Chr12:32052311 7.74E-72 dispersed
Bda01g01833 Bda-Chr1:54446778 Bda11g00143 Bda-Chr11:1883290 1.63E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16565 PF00847 AP2 6.70E-13 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00143 - - qsu:112002896 281.567