Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00160 ATGTCAAATGCAGAAAGGAAAGTGATACTGCCTGGTTCTTTTAATCCGTTGCATGATGGTCACCTCAAGCTTTTGGAAGTTGCTACTAGTATTTGTGGTGATGGATATCCGTGCTTTGAATTATCAGCAGTGAATGCAGATAAACCTCCATTGTCAGTCTCACAAATCAAAGATCGTGTCAAGCAATTTAAAGAATGTGGAAAGACAGTAATTATATCCAATCAGCCTTATTTTTATAAGAAAGCTGAACTTTTTCCTGGAAGTGCTTTTGTAATCGGTGCTGACACAGTAGCGAGGTTGATACAGCCTAAGTATTATGATAATGACTACAAGAAGATGCTGGAAATTCTACTCCGATGCAAAAACACTGGTTGCACTTTTCTTGTTGGTGGTAGAAATGTAAATGGTGTTTTCAAAATTCTTGAAGATTTTGACATTCCGGACGAGTTAAAAGACATGTTCATCTCTATACCTCAGGAAAAATTTCGCATGGACATATCCTCCACTGAAATTAGGACTCGTTCAGGAATATAA 534 37.45 MSNAERKVILPGSFNPLHDGHLKLLEVATSICGDGYPCFELSAVNADKPPLSVSQIKDRVKQFKECGKTVIISNQPYFYKKAELFPGSAFVIGADTVARLIQPKYYDNDYKKMLEILLRCKNTGCTFLVGGRNVNGVFKILEDFDIPDELKDMFISIPQEKFRMDISSTEIRTRSGI 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2096834 2098716 + Bda004874.1 Bda11g00160 15268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00160 177 Pfam Cytidylyltransferase-like 10 174 IPR004821 GO:0003824|GO:0009058
Bda11g00160 177 PANTHER NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE 2 174 - -
Bda11g00160 177 Gene3D HUPs 2 176 IPR014729 -
Bda11g00160 177 SUPERFAMILY Nucleotidylyl transferase 6 174 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00160 - - - nnu:104613296 313.153
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g353 . . . Bda11g00160 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0426 . . Csa05g02060 . . . . . Bda11g00160 . . . . . . Cmo15g00968 . . . Car15g00872 Cpe13g00391 . Bhi12g00843 . . . . . Lcy10g1469 Cla01g00576 Cam01g0602 Cec01g0593 Cco01g0617 Clacu01g0595 Cmu01g0568 Cre09g1939 Lsi09g00624 . Chy09g00888 Cme09g01421
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010232 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00160 Bda_Chr11 FPKM 12.145712 12.835268 7.701543 7.728328 23.657101 19.856663 25.808067 2.002201 2.41532