Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00161 ATGGGGAAGAGAAAACGGAGAAATTGCAGGCAGAGGAAGAAGAAACGCAAAATTGATGCAAGTCAGGAGAAGATCATTGCAGATTGGTCGAGCCTTCCCCGAGATGTACTTATGAGGATCTTTGAGAAGCTAACTCTAATTGACTTGGTGTCTGTCGATGGTGTTTGCCAGCACTGGAGAAGCGTTCTTCCCGACATTCCTTGTTGGAAAACCTGTGGATTTCCATGGCTTATAATGTCTGGTCAAAAGGACAGAGAAATGAGAACTTGTATAAGCATATTAGAGGGCAGAGTTTGGGAGATAGAATTGCCTGAGGCATATGGAGCTTATATCTGGGGTTCATATCAAAACTGGTTGATTGTAGTTAATGATCTTGGCTCTTTCAGTATTCATATCAGTTTATTGAATCCATTTTCCCGTTCCAAAATCAACTTGCCCGAAATATGGAATTTCTATCACAAAATGGTCCTCTCGGGCCCTCCTGAAGAGAAAAACTTGGTTTGCCTGCTTGTCCACAGTGAGGATCAAGAGCTTGCATTTTGGATTCGAGGATTTAAATCATGGCGGAAGCATAAGTTAGGCTGTTCTGCACCTTTCGAGGATGCCATTTTCTGTAATGGTAGTTTCTTTCTCCTATGTAAAGATCATAGTGTTCTTGAAGTCGATGCTGCAAGTATTTTATCGTCCATAAATGAAGACGATGAAAAGTTATCGATCTCTCCTGTTAAAATTCTGACCCATGAAGTAAGAATGATTGAGAATTACAATCCTAATCACTTGTTGAAATATCTTGTGGAATCTTTCGGAGAGATTTTTCTTGTCTGCAGGTATTTCAGTGACAAACCCGACACTCCGTTGGAAACCCAAAATTTCAAGATCTACTTGCTTGACCTCTGCACGATGGTATGGAACGAGCTCGATAATGTGGGATCAAAAATTCTTTATTTGGGCAAATGCTGTTCGAGATTCATCTCTTCGAAGGAATTAGGAGTTCCAATTGCAGACACTATCTATTTTGCCAATGATGATCCAGTCCCTTGGTGGAATGAGTGGGATGCATATCACTTGAAAGGCATCTTTGCTCAGGTCGGTTTGGACAATGGGGGTCGTAAAGATTGGGGAACTTTTCGGATTGGCAGGAAATACGATAATCAAGGTTTTCTCTTTCGTGGTGATCGAATTAAGTGGGCTCCGATCTGGTTTACAGCACCCGCATGGTGGTTTTGCTGTGGAATTTCGTTGTTTAGGGGGATATTTTTTTATCCCGTTGTCGAGATGTTTAGAGCCGGTTTGCCGTTTAGTCGTGGTCGTGGTGAGGATCGATTTTATAATTCGGCGAAAGCACGTCGGGCGAACCAAAATCGGCAGAATGATCAGCTTCGCTGTGCTCGGAGTGATTTATCGACTATAAAATCGTCGTCCGAGCCTGACGATGGATTTGGATGTGACGAGCCTCCAAAACCTGTCTCCTCTACTGATTTTGAAATGGTCGCGTCGTCGTTGAGTAATCTCGAGAGATTCTTGCAGTCTATAACTCCTTCTGTGCCTGCGCAGTACCTCCCTAAGACGAGGACGAGAGCTTGGAGGACTTGTGCTCCGCTGTTGCAGCCATACTTCATACTTGGTGATTTGTGGGAGTCTTTTAAGGAGTGGAGTGCATATGGTGCAGGCGTGCCTCTAATATTAAATGACAGCGATTCAGTGGTTCAATACTATGTACCATATTTGTCCGGCTTACAGATATATGTTAATTCCTTGAATAGCGATGGTAGTAGTGATTCGGAACCTGAAAGATCACTAAAACATATAAGGGAACAAAATGATGATCTTTTATATGGTGAAATACCCCTCGAGATGGATAGATTATTGTTGCATGACCAGCCTGTTGTACTTCAAGGAGATTGCTCTAGCGACGAGGCGGAATCTGTCAATGCTCAAGGGTGCCTTCTTTTTGAATATCTTGAACATGACCTGCCTTATAGTCGTGAACCTTTGGCCGACAAGGCTAATCTTGCTTTCCGTGTCCCCGAGCTCAATACATTAAGAAGCTGTGATCTACTGCCTTCGAGTTGGATTTCTGTGGCATGGTATCCAATTTATAGAATACCTACTGGACCGACGTTAAGGGATCTGGATGCCTGCTTTCTCACCTACCATTGTCTTTACACACCGATTGGAGGTGCGCAAAGTGCACAGGCTCCAGTGTTGACACATACCTGTGAAGCCGATGGCATCCCTAAGATGTCCTTGCCCGTTTTTGGTCTTGCTTCGTACAAGTTTAAGGGATCCTTGTGGACCCCTAATGGTGGTTTCGAGCACCAATTAGCTCACTCCCTCTCCCAGTCTGCTGATAAATGGTTAAGAGAGCTCCGCAATCCCAGCTCAATGTTCCTCCTATCCTCAACCTTTTTTTTGTCATTGGTCAGACAGGGTCCCACCAAACCACAAGCTATGGTCACCTCTTTCGCAGACCACTTTTCTGGAGAGCTCCAGCCAATAAGATTTTATGGCGTGTCAGTCTTCCGACGGAAAGCGAAAAGCCAATATAAAGTTGCAGAGAAATTGAATGAGACTGTTCGTAGTGCATTTCTTGCTAAGCAAGCCAAGGTAGTCCCAGATGAGTACGACGAGGAAACGCACTGCTTATACACTACCGACGCCTCGACTGTGTACGGCCTGTCGGCCTTTTGTCTGCTTATCCTCAGCCACGCAGTGGTTCACGCCGTCACTAGGTGTCTCTGCTTCGGCAAGGGTTTAATTTCCGGTCGCTCAACTTCCTGTGCCATTTTCCTCTTCATCTTTTCCTGGATTAGCTTCCTGGGAGCAGAGGCTTGCTTGTTGGCAGGATCGGCTAGAAATGCATATCACACTAAATACCGAAGACTTTTTCCAGCAAAAGACCTTTCATGCTCAACTCTTCGAAAGGGCGTTTTTGCAGCTGCAGCTGCTCTTACATTGGTATCATTGGTGGCTTCCATTCTCTACTATTGGGCCCACTCTAGAGCTGATACGGGTGGGTGGGAGAAGCACCAGAATGAAGGTCTTGCAATGCCTGCTTCGAACTATGAAGAACATCAACGCCACCAAACCCAACAAGCTGGTGAGTTTGAGAAGCCATAG 3120 44.9 MGKRKRRNCRQRKKKRKIDASQEKIIADWSSLPRDVLMRIFEKLTLIDLVSVDGVCQHWRSVLPDIPCWKTCGFPWLIMSGQKDREMRTCISILEGRVWEIELPEAYGAYIWGSYQNWLIVVNDLGSFSIHISLLNPFSRSKINLPEIWNFYHKMVLSGPPEEKNLVCLLVHSEDQELAFWIRGFKSWRKHKLGCSAPFEDAIFCNGSFFLLCKDHSVLEVDAASILSSINEDDEKLSISPVKILTHEVRMIENYNPNHLLKYLVESFGEIFLVCRYFSDKPDTPLETQNFKIYLLDLCTMVWNELDNVGSKILYLGKCCSRFISSKELGVPIADTIYFANDDPVPWWNEWDAYHLKGIFAQVGLDNGGRKDWGTFRIGRKYDNQGFLFRGDRIKWAPIWFTAPAWWFCCGISLFRGIFFYPVVEMFRAGLPFSRGRGEDRFYNSAKARRANQNRQNDQLRCARSDLSTIKSSSEPDDGFGCDEPPKPVSSTDFEMVASSLSNLERFLQSITPSVPAQYLPKTRTRAWRTCAPLLQPYFILGDLWESFKEWSAYGAGVPLILNDSDSVVQYYVPYLSGLQIYVNSLNSDGSSDSEPERSLKHIREQNDDLLYGEIPLEMDRLLLHDQPVVLQGDCSSDEAESVNAQGCLLFEYLEHDLPYSREPLADKANLAFRVPELNTLRSCDLLPSSWISVAWYPIYRIPTGPTLRDLDACFLTYHCLYTPIGGAQSAQAPVLTHTCEADGIPKMSLPVFGLASYKFKGSLWTPNGGFEHQLAHSLSQSADKWLRELRNPSSMFLLSSTFFLSLVRQGPTKPQAMVTSFADHFSGELQPIRFYGVSVFRRKAKSQYKVAEKLNETVRSAFLAKQAKVVPDEYDEETHCLYTTDASTVYGLSAFCLLILSHAVVHAVTRCLCFGKGLISGRSTSCAIFLFIFSWISFLGAEACLLAGSARNAYHTKYRRLFPAKDLSCSTLRKGVFAAAAALTLVSLVASILYYWAHSRADTGGWEKHQNEGLAMPASNYEEHQRHQTQQAGEFEKP 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2101318 2110007 - Bda004875.2 Bda11g00161 15269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00161 1039 ProSiteProfiles F-box domain profile. 26 72 IPR001810 GO:0005515
Bda11g00161 1039 Coils Coil 443 463 - -
Bda11g00161 1039 SUPERFAMILY F-box domain 28 70 IPR036047 GO:0005515
Bda11g00161 1039 Gene3D - 28 69 - -
Bda11g00161 1039 PANTHER T15D22.8 588 794 - -
Bda11g00161 1039 PANTHER DUF789 FAMILY PROTEIN 427 584 - -
Bda11g00161 1039 PANTHER DUF789 FAMILY PROTEIN 588 794 - -
Bda11g00161 1039 SMART fbox_2 32 72 IPR001810 GO:0005515
Bda11g00161 1039 PANTHER T15D22.8 427 584 - -
Bda11g00161 1039 Pfam F-box-like 29 71 IPR001810 GO:0005515
Bda11g00161 1039 Pfam Protein of unknown function (DUF789) 502 791 IPR008507 -
Bda11g00161 1039 Pfam Protein of unknown function (DUF1218) 895 989 IPR009606 -
Bda11g00161 1039 MobiDBLite consensus disorder prediction 1018 1039 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00161 - - - cmos:111458880 512.301
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00685 Bda-Chr3:5846143 Bda11g00161 Bda-Chr11:2101318 5.52E-13 dispersed
Bda06g00047 Bda-Chr6:514335 Bda11g00161 Bda-Chr11:2101318 1.17E-15 dispersed
Bda09g00492 Bda-Chr9:6421408 Bda11g00161 Bda-Chr11:2101318 1.96E-37 dispersed
Bda11g00161 Bda-Chr11:2101318 Bda12g00079 Bda-Chr12:586005 1.06E-73 dispersed
Bda11g01150 Bda-Chr11:11713440 Bda11g00161 Bda-Chr11:2101318 1.77E-15 dispersed
Bda01g01846 Bda-Chr1:54572905 Bda11g00161 Bda-Chr11:2101318 3.20E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g351 . . . Bda11g00161 . . . . Cmo04g01564 . . . Car04g01545 . Sed07g2111 . Cpe01g01331 Bhi07g01289 Tan04g0818 Cmetu10g0877 Lac13g0528 Hepe01g1166 . . Cla05g02277 Cam05g2448 Cec05g2469 Cco05g2513 Clacu05g2443 Cmu05g2305 Cre05g2423 Cone13ag0804 Cone19ag0809 . . Lsi04g00228 Csa05g02061 Chy10g01172 Cme10g00232 . . . Bda11g00161 . . . . . . Cmo15g01032 . Cma15g00987 . Car15g00927 Cpe13g00392 . Bhi12g00840 . . . . . Lcy10g1470 Cla01g00575 Cam01g0601 Cec01g0592 Cco01g0616 Clacu01g0594 Cmu01g0567 Cre09g1940 Lsi09g00623 . Chy09g00598 Cme09g01422
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011611 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 0 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00161 Bda_Chr11 FPKM 37.894905 37.673035 0.244116 0.492134 0.0 0.0 0.0 1.229185 1.380467