Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00178 ATGCCAACTTCCGACCAACATTTTCCAGTTTATGGGAAGCAACCGGCAACAGGAGTGCCACCTTATCCCGGGATCCATCCAGTTTTTCCTCCTCCTGGCCGAACTTCAACTCCTTGGTCGACTGACCTGTGTCAAACCTCCTGTTGTTGGCTTTGGTGCTTAACGTGTTGGCTGCCATGTATAACTTTTGGGCGGATTGCTGAGATTGTTGATGGAGGATCATCATCCTGCATAACACATGCCACCTTGTATGCAATGGTGAAACACATGACTGGTTGCGTTTGTGTGTACTCTGGGTTTTATCGAGCAAAGATTAGGCAGCAATATGGGTTGGAAGAAAGCCCTTGCAATGATTACTGCACTCATTGTTGTTGCCACAATTGTGCCTTACGCCAAGAATACCGCGAGCTAGAGCTTCGTGGGTTCGACTTATCCCTTGGATGGAACGAAAACATTCGACGAAAAATGCGAGAAGCACAATTGGTTCAGTCAGCACCGACCATGCAAGCAGGCATGTATCGTTGA 525 47.81 MPTSDQHFPVYGKQPATGVPPYPGIHPVFPPPGRTSTPWSTDLCQTSCCWLWCLTCWLPCITFGRIAEIVDGGSSSCITHATLYAMVKHMTGCVCVYSGFYRAKIRQQYGLEESPCNDYCTHCCCHNCALRQEYRELELRGFDLSLGWNENIRRKMREAQLVQSAPTMQAGMYR 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2269247 2271642 + Bda004894.1 Bda11g00178 15286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00178 174 PANTHER PROTEIN PLANT CADMIUM RESISTANCE 1-RELATED 31 173 - -
Bda11g00178 174 TIGRFAM A_thal_Cys_rich: uncharacterized Cys-rich domain 38 138 IPR006461 -
Bda11g00178 174 Pfam PLAC8 family 39 136 IPR006461 -
Bda11g00178 174 PANTHER DUF614 FAMILY PROTEIN-RELATED 31 173 IPR006461 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00178 - - - qsu:111999286 174.866
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01713 Bda-Chr7:32103474 Bda11g00178 Bda-Chr11:2269247 5.84E-39 dispersed
Bda07g01819 Bda-Chr7:35334971 Bda11g00178 Bda-Chr11:2269247 6.06E-09 dispersed
Bda11g00178 Bda-Chr11:2269247 Bda14g00962 Bda-Chr14:7743234 2.55E-06 dispersed
Bda11g00177 Bda-Chr11:2234767 Bda11g00178 Bda-Chr11:2269247 2.87E-55 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g475 . . . Bda11g00178 . . . . . . . . . . . . . Bhi07g00372 . . Lac13g1388 Hepe01g0561 . . . . . . . . . . . . . Lsi04g01114 . . . . Blo11g00972 . Bda11g00178 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001588 3 2 1 2 1 1 1 1 0 2 1 1 3 3 3 3 0 6 3 1 2 1 1 2 2 3 2 2 1 13 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00178 Bda_Chr11 FPKM 29.164673 35.218624 10.158663 9.408771 10.707647 9.067184 10.32528 25.038122 24.853802