Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00183 CGCTTTCTTCTGCTCTTTTTGGGGAAGATGGCTTGCTTGGTTTCTCGCTCTGGAAGAGAGTTGCAGAGATACAGCAACATGGGTTGTCGCCAAGTCGTAGGTTGTAACTTCCTGAATTTTTCCAAAAATGTGAAGTGCTTGCGATGTGATGGCATATTCCTAGAACGACTGAGGAAATTAAACAAGGACTTGGATCATCTTCCGTTGAAGAAGGGGGACTGGATATGTGACAAATGCTGCTTCTTGAATTTTGCAAAGAACTCGCGATGTTTGCAGTGCGAAGAAAAGCCAAGAAACCGTCAATTAAATCCAGGGGAGTGGGAATGCGAATCGTGCAACTACATTAATTTCAGAAAAAATATGGTATGCTTGAGGTGCGATCATAGACGGCCAAAAGGATCAAAAGATTTAAATATAAAGTCTTCTACTCTACTCGCTGAGAAAGAAGCACTCCGTGGTTTGTTTAAACCAAGATTTGCTAGAATAGAGAGTGATTCTGTTGGTGACATATCTAAGGGTCAAGCTAGGAAGGTTGGAATCAGAAGATCTAATACCTGGCGGTCTATTGATAATGATGCTGAAGGTCCTTCAATTTCGCAGAGCGGGACATATGGTCTGGCTGATTTCCCAATTCTCGGTGGCAAGAGTGATTTGTCCCGTTCTGCAGAAAGAAGAGAAAAATGGAAAGAAGAGATTCAGAGGAAGAGTACCGAGGGCGGAGAGGCATGGAAGAAGGAAAAGGAACTTGGGTCTTCATCTTCCGATATTCAAGACGAATGTGAGTGTACTGAACTCACCGATGATGAAGAGATGGCTGGGTGGTTTGCTGCTAACCTGAAGAAGGAGATCGAAAGTTCATGA 861 43.44 RFLLLFLGKMACLVSRSGRELQRYSNMGCRQVVGCNFLNFSKNVKCLRCDGIFLERLRKLNKDLDHLPLKKGDWICDKCCFLNFAKNSRCLQCEEKPRNRQLNPGEWECESCNYINFRKNMVCLRCDHRRPKGSKDLNIKSSTLLAEKEALRGLFKPRFARIESDSVGDISKGQARKVGIRRSNTWRSIDNDAEGPSISQSGTYGLADFPILGGKSDLSRSAERREKWKEEIQRKSTEGGEAWKKEKELGSSSSDIQDECECTELTDDEEMAGWFAANLKKEIESS 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2370374 2376190 + Bda004900.2 Bda11g00183 15291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00183 286 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 47 279 - -
Bda11g00183 286 Coils Coil 218 238 - -
Bda11g00183 286 Gene3D - 63 97 - -
Bda11g00183 286 Gene3D - 98 134 - -
Bda11g00183 286 MobiDBLite consensus disorder prediction 218 254 - -
Bda11g00183 286 MobiDBLite consensus disorder prediction 218 259 - -
Bda11g00183 286 SUPERFAMILY Ran binding protein zinc finger-like 98 133 IPR036443 -
Bda11g00183 286 ProSiteProfiles Zinc finger RanBP2 type profile. 70 99 IPR001876 -
Bda11g00183 286 PANTHER ZINC FINGER PROTEIN 47 279 - -
Bda11g00183 286 ProSiteProfiles Zinc finger RanBP2 type profile. 103 132 IPR001876 -
Bda11g00183 286 Pfam Zn-finger in Ran binding protein and others 105 127 IPR001876 -
Bda11g00183 286 Pfam Zn-finger in Ran binding protein and others 70 94 IPR001876 -
Bda11g00183 286 ProSitePatterns Zinc finger RanBP2-type signature. 74 93 IPR001876 -
Bda11g00183 286 SMART zf_4 105 129 IPR001876 -
Bda11g00183 286 SMART zf_4 72 96 IPR001876 -
Bda11g00183 286 SMART zf_4 33 52 IPR001876 -
Bda11g00183 286 ProSitePatterns Zinc finger RanBP2-type signature. 107 126 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00183 - - - zju:107429245 262.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00183 Bda-Chr11:2370374 Bda12g00411 Bda-Chr12:4987709 4.40E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g489 . . . Bda11g00183 Bpe13g01010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0370 . . Csa05g01992 . . . . . Bda11g00183 . . . . . . Cmo15g01024 . Cma15g00977 . Car15g00923 Cpe13g00350 Cpe04g01365 Bhi12g00936 . . . Hepe02g2626 . . Cla01g00635 . . Cco01g0681 Clacu01g0651 Cmu01g0625 Cre09g1879 Lsi09g00684 . Chy09g00823 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011612 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00183 Bda_Chr11 FPKM 10.333475 14.361469 19.354628 19.79936 15.930863 15.742565 15.640273 26.215454 26.108084