Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00186 ATGGCTACAATGGAGAGCTTGATCGGTCTGGTTAATCGAATCCAACGAGCCTGCACTGCATTAGGAGACTATGGCGGGGAGGGAATGTCTCTTTGGGAAGCCCTTCCTTCCGTCGCTGTCGTCGGGGGACAGAGTTCCGGGAAATCTTCGGTGCTGGAAAGCGTTGTTGGAAGAGATTTCCTGCCTCGTGGATCTGGAATTGTTACGAGGAGACCATTAGTGTTACAGCTGCATAAGATAGAAGGAAAATCTGAATATGCAGAGTTCCTTCACGCTCCAAAGAAGAAGCTCACTGACTTCGCTGCTGTGCGTAAAGAAATCCAAGATGAGACAGATCGCATAACTGGAAAAACAAAACATATATCAAATATTCCAATTCATTTGAGCATATATTCTCCAAATGTTGTGAACTTAACTCTTATAGATCTTCCTGGTTTGACAAAGGTTGCTGTAGAGGGACAACCAGACAGCATTGTTGAAGATATTGAAAACATGGTTCGTTCTTATGTTGAGAAGCCTAACTGCATTATATTGGCAATATCTCCTGCTAATCAAGATATTGCAACGTCAGATGCTATAAAACTTGCGAGAGAAGTTGATCCTTCAGGTGAAAGAACATTTGGAGTACTTACAAAATTGGATCTGATGGACAAGGGAACCAATGCTCTGGATGTTATTGAAGGAAGGTCATACAGGCTGCAGCACCCCTGGGTTGGAATTGTGAACCGTTCACAAGCTGACATCAATAAGAATGTTGACATGATTTCTGCTCGTAAAAAGGAACAAGAATATTTTGAAACAAGCCCTGAGTATGGACACTTGGCACATAAAATGGGCTCAGAATATCTTGCCAAGCTTTTATCTAAGCATCTGGAGACTGTCATTAGACAACGCATCCCAAGTATTATTGCCTTGATAAATAAGACGATTGATGAGCTAAATGCAGAGTTGGACCGAATTGGAAGGCCTATAGCTGTAGACTCTGGGGCACAACTATACACAATTTTAGAAATGTGTCGTGCATTTGACCGTGTGTTCAAGGAACACCTAGATGGAGGACGACCTGGCGGAGATCGTATATACGGTGTTTTTGACCACCAACTACCTGCTGCCTTGAAAAAACTACCACTTGATCGACATCTCTCATTGAAAAATGTCCAAAAAGTTGTGACAGAAGCTGATGGCTATCAACCCCATTTGATAGCTCCAGAACAAGGATATAGAAGACTTATAGATGGATCCATAAGCTTTTTCAAGGGTCCAGCTGAAGCGTCTGTGGATGCTGTAATGTTCATAATTATTCATATATTCAGGAATCATCTATGTGAATTTCAGGAACTTAAACGATTTCCGACACTTCAATCTGACATAGCAGCTGCAGCAACAGAAGCTCTAGAAAGATTTCGTGAAGAAAGCCGAAGAACCACTTTACGATTAGTGGAGATGGAATCTAGCTACCTTACAGTAGATTTTTTCCGGAAGTTGCATATGGAATCAGAGAAAAGTCCGAACCCAGCAGGCCAAAATTCTGACAGGTTTACAGATAATCATCTTAGGAAGATTGGGTCGAATGTCAATTCCTATATTGGAATGGTATGTGAAACGCTGAAGAATTCTATTCCAAAAGCTGTTGTTTACTGTCAAGTACGTGAGGCTAAAAGATCATTGCTCAACCACTTCTATGCTCAAGTGGGGAAGAGGGAGAAGGCGCAACTTGGTGGCATGTTAGATGAAGATCCTTCATTGATGGAGCGCAGAACGACCATAGCTAAAAGGCTTGAGCTATACAAGTCGGCTCGAGACGAGATCGACGCGGTGGCATGGAAATGA 1830 42.4 MATMESLIGLVNRIQRACTALGDYGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKIEGKSEYAEFLHAPKKKLTDFAAVRKEIQDETDRITGKTKHISNIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVEDIENMVRSYVEKPNCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLDLMDKGTNALDVIEGRSYRLQHPWVGIVNRSQADINKNVDMISARKKEQEYFETSPEYGHLAHKMGSEYLAKLLSKHLETVIRQRIPSIIALINKTIDELNAELDRIGRPIAVDSGAQLYTILEMCRAFDRVFKEHLDGGRPGGDRIYGVFDHQLPAALKKLPLDRHLSLKNVQKVVTEADGYQPHLIAPEQGYRRLIDGSISFFKGPAEASVDAVMFIIIHIFRNHLCEFQELKRFPTLQSDIAAAATEALERFREESRRTTLRLVEMESSYLTVDFFRKLHMESEKSPNPAGQNSDRFTDNHLRKIGSNVNSYIGMVCETLKNSIPKAVVYCQVREAKRSLLNHFYAQVGKREKAQLGGMLDEDPSLMERRTTIAKRLELYKSARDEIDAVAWK 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2394423 2403316 + Bda004903.1 Bda11g00186 15294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00186 609 SMART GED_2 513 606 IPR003130 GO:0003924|GO:0005525
Bda11g00186 609 PANTHER BNAA09G45430D PROTEIN 4 609 - -
Bda11g00186 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 308 IPR027417 -
Bda11g00186 609 CDD DLP_1 35 300 IPR001401 GO:0003924|GO:0005525
Bda11g00186 609 SMART dynamin_3 4 251 IPR001401 GO:0003924|GO:0005525
Bda11g00186 609 Pfam Dynamin central region 221 489 IPR000375 -
Bda11g00186 609 Gene3D Dynamin, middle domain 326 572 - -
Bda11g00186 609 Pfam Dynamin family 38 212 IPR045063 -
Bda11g00186 609 Pfam Dynamin GTPase effector domain 516 606 IPR003130 GO:0003924|GO:0005525
Bda11g00186 609 PRINTS Dynamin signature 201 217 IPR022812 -
Bda11g00186 609 PRINTS Dynamin signature 182 200 IPR022812 -
Bda11g00186 609 PRINTS Dynamin signature 224 243 IPR022812 -
Bda11g00186 609 PRINTS Dynamin signature 35 53 IPR022812 -
Bda11g00186 609 PRINTS Dynamin signature 132 149 IPR022812 -
Bda11g00186 609 PRINTS Dynamin signature 60 77 IPR022812 -
Bda11g00186 609 Gene3D - 4 309 IPR027417 -
Bda11g00186 609 PANTHER DYNAMIN 4 609 IPR022812 -
Bda11g00186 609 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 61 70 IPR019762 -
Bda11g00186 609 ProSiteProfiles GED domain profile. 518 609 IPR020850 -
Bda11g00186 609 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 32 300 IPR030381 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00186 - - - csv:101212826 1085.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01131 Bda-Chr6:40170616 Bda11g00186 Bda-Chr11:2394423 2.62E-76 dispersed
Bda11g00186 Bda-Chr11:2394423 Bda13g00458 Bda-Chr13:5525957 0 dispersed
Bda11g00186 Bda-Chr11:2394423 Bda11g00309 Bda-Chr11:3426578 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g501 . Blo16g00754 . Bda11g00186 Bpe13g01007 . . . . . . . . . . . Cpe01g01825 . . . . . . . . . . . . . . . . Cone6ag0359 Cone9ag0389 . . . . . . . Bda11g00186 . . . Bma06g01131 . . . . . . . . . Bhi12g00950 . . . Hepe02g2616 . . Cla01g00644 Cam01g0671 Cec01g0663 Cco01g0689 Clacu01g0660 Cmu01g0633 Cre09g1872 Lsi09g00692 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000261 5 7 3 6 5 5 6 5 5 5 4 4 4 6 5 6 4 8 5 5 5 5 5 5 5 4 4 8 5 5 154
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00186 Bda_Chr11 FPKM 1.269534 1.431674 1.915556 2.12914 2.291364 2.056848 2.20783 2.060726 2.072187