Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00187 ATGGCAACTATACAGAGAGTATCGCAGTCCAGTTTAGGGGCAAGTCCGAGCAATTATGGCTTAAGTAAGAGCAGCGGTGACGGTGGTGGAGAAGCTGCTGTGTCGGATCAGTTTCCCGCGGGATTGAGGGTTCTTGTTGTTGACGATGACACCACCTGCTTGAGGATTATTGAGCAAATGCTACTCAGGTGTCTATATCACGTGACTATGTGTTCCCAAGCTGCTGTTGCTTTAAACCTTCTGCGTGAGAAGAAAGGCTGTTTTGATGTGGTATTGAGTGATGTGCACATGCCTGATATGGATGGATATAAGCTCCTTGAATATGTTGGGCTTGAGATGGACCTTCCTGTCATAATGATGTCGGCTGATAAAAGAACAAGTGCCGTGATGAAAGGAATCAGACATGGGGCTTGTGATTATTTAATTAAGCCCATTCGCGAGGAAGAACTGAAGAATATCTGGCAGCATGTTGTTCGAAAAAAATGGAATGAATATAAGGAACTTGAAAATTCTGGAAGTTTGGAAGAGAATGATAAGCAAATCCGTGGGACTGATGATGCAGAATGTGCTTCTTCTGCACACGAAGGAGAAGAAGGAATTATGAGAGCTACTAGAAAAAGAAGCAGTTCGAAAGAAGATGACAGTGAACTGGAAAATGATGATCCTTCTGCCTCAAAGAAGCCACGAGTCGTGTGGTCTGTGGAGTTGCACCAACAATTTGTCAGTGCTGTGAACCAACTCGGCCTAGATAAGGCTGTGCCTAAGAGGATTCTTGAATTAATGAACGTACCTGGTTTAACAAGAGAAAATGTTGCTAGCCATCTGCAGAAATTCAGGCTATATTTAAAGAGGCTAAGCGGAGTAGCTCAACAACAAAATGCTATTCCAAATATTTATTGTGGACCTTTAGAACAAAATTTTAAATTGGATGCATTGGGAGTTGAAGCGTTGGCCGTCTCTGGTCAAATTTCTCCACAAACTCTAGCAGCCTTGCACGCTGAGCTGTTAGGCCGATCAATGTGTAACCTGAGACCATCAATGGATCAGCCAGCTGTTTTGCAAGGAACATTGCTGGGAACCAAGCTAATAGCAGTTGAACATGAACCAGTTGATCCATTTAGTCAAACTTTGGTGAAATGCCAATCTAGTAATTCCAAAAATTATTCGCCTTCCGTTATGTCTGTTGATTGTGTTACTTCTGGATATAGTGGTGCATACCAACCAAATGGGCCTAGTTTTGTAGGGCCAAACGATCTTGGTAGGATGAGTTCTCAGAATGCTAACATGTTGGTTGGAACCCTGCAGCAGCAGCAACAATTGCATAAACAATATGAGCAACGGCAGGAGCAAAAACAACATCCACAACAGCCACAACAGCCACAACAGCCACAACAGCCACAACAGCAGTTAATGTCATCAGAGCCCAGCTGCTCAATCAATGTCCAGCCATCTTGCCTGGTTCTGCCCTCACATTCATCGGTCAATTTTCTTGCTGGAAACATTCCTGATTTTTCCAAACATAATCACAACATTAATAGGGGTACTATTATTGATTACAGCATTGCCTCAACTCAACGCGTCAGTTCATTGTCAAATTTTAACCAGACAGATGGGGATCTAAACCCTCATAATGCAATTAGTGGGTATTTGACTCAAATGTCAGGTTCTTCAGTGTCGTATTATTCGTTAAATGGTGCCAATAACTCTGTTGGTCACGTAGAAGCCTCCAGATTAACTTCTGCCGGCAGTCATTTACCTGGGGTTTCTCACAAGAAGACTGATATAAAGGGATTTTATGGCTCAAAATCAGAAGAAATGCTTGATCAAGGCCGTTTTAGGAACCTTGTATTTGTTGGTAAAGGGTCTTCTTCTCAAAGCCGATCTCCAGTTGAAGAGATTGTTTCACCAATGACTAATGAGCAACTTGACCATTGGAAAAATTATATGCCAAACCGTAGCAGGATGAAGCAGGAACCTCTCATAAAGTACGTAGAGAGTACAGAGGTGGGACTTCCGATACAAAAAGTTCTTCAATGA 2037 42.56 MATIQRVSQSSLGASPSNYGLSKSSGDGGGEAAVSDQFPAGLRVLVVDDDTTCLRIIEQMLLRCLYHVTMCSQAAVALNLLREKKGCFDVVLSDVHMPDMDGYKLLEYVGLEMDLPVIMMSADKRTSAVMKGIRHGACDYLIKPIREEELKNIWQHVVRKKWNEYKELENSGSLEENDKQIRGTDDAECASSAHEGEEGIMRATRKRSSSKEDDSELENDDPSASKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQNAIPNIYCGPLEQNFKLDALGVEALAVSGQISPQTLAALHAELLGRSMCNLRPSMDQPAVLQGTLLGTKLIAVEHEPVDPFSQTLVKCQSSNSKNYSPSVMSVDCVTSGYSGAYQPNGPSFVGPNDLGRMSSQNANMLVGTLQQQQQLHKQYEQRQEQKQHPQQPQQPQQPQQPQQQLMSSEPSCSINVQPSCLVLPSHSSVNFLAGNIPDFSKHNHNINRGTIIDYSIASTQRVSSLSNFNQTDGDLNPHNAISGYLTQMSGSSVSYYSLNGANNSVGHVEASRLTSAGSHLPGVSHKKTDIKGFYGSKSEEMLDQGRFRNLVFVGKGSSSQSRSPVEEIVSPMTNEQLDHWKNYMPNRSRMKQEPLIKYVESTEVGLPIQKVLQ 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2406265 2410826 - Bda004904.1 Bda11g00187 15295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00187 678 PIRSF RR_ARR_type-B 22 669 IPR017053 GO:0003677|GO:0003700|GO:0009736
Bda11g00187 678 Pfam Response regulator receiver domain 44 152 IPR001789 GO:0000160
Bda11g00187 678 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 227 280 IPR006447 GO:0003677
Bda11g00187 678 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 38 497 - -
Bda11g00187 678 SMART REC_2 42 154 IPR001789 GO:0000160
Bda11g00187 678 CDD REC_typeB_ARR-like 44 158 - -
Bda11g00187 678 Pfam Myb-like DNA-binding domain 229 277 IPR001005 -
Bda11g00187 678 PANTHER TWO-COMPONENT RESPONSE REGULATOR 38 497 IPR045279 GO:0009736
Bda11g00187 678 MobiDBLite consensus disorder prediction 434 475 - -
Bda11g00187 678 SUPERFAMILY CheY-like 41 169 IPR011006 -
Bda11g00187 678 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 283 IPR017930 -
Bda11g00187 678 MobiDBLite consensus disorder prediction 1 24 - -
Bda11g00187 678 MobiDBLite consensus disorder prediction 176 225 - -
Bda11g00187 678 ProSiteProfiles Response regulatory domain profile. 43 158 IPR001789 GO:0000160
Bda11g00187 678 Gene3D - 223 286 - -
Bda11g00187 678 Gene3D - 42 178 - -
Bda11g00187 678 MobiDBLite consensus disorder prediction 1 32 - -
Bda11g00187 678 SUPERFAMILY Homeodomain-like 225 284 IPR009057 -
Bda11g00187 678 MobiDBLite consensus disorder prediction 450 475 - -
Bda11g00187 678 MobiDBLite consensus disorder prediction 176 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00187 - - K14491 jre:109003013 712.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00918 Bda-Chr3:8109038 Bda11g00187 Bda-Chr11:2406265 2.99E-40 dispersed
Bda03g01158 Bda-Chr3:12761839 Bda11g00187 Bda-Chr11:2406265 5.44E-106 dispersed
Bda08g00304 Bda-Chr8:3176640 Bda11g00187 Bda-Chr11:2406265 4.81E-132 dispersed
Bda09g01515 Bda-Chr9:46870769 Bda11g00187 Bda-Chr11:2406265 9.43E-25 dispersed
Bda11g00074 Bda-Chr11:917530 Bda11g00187 Bda-Chr11:2406265 6.41E-94 dispersed
Bda11g00695 Bda-Chr11:6921384 Bda11g00187 Bda-Chr11:2406265 5.68E-24 dispersed
Bda01g01795 Bda-Chr1:54160869 Bda11g00187 Bda-Chr11:2406265 0 wgd
Bda11g00187 Bda-Chr11:2406265 Bda08g00081 Bda-Chr8:750110 2.61E-23 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00187 . 76 338 Response Regulator Gene Family AT3G16857 52.1 1.6e-70 264.2
Bda01g01795 . 76 337 Response Regulator Gene Family AT3G16857 52.1 1.3e-69 261.2
Bda11g00074 BCT,CCT,ECH 15 264 Response Regulator Gene Family AT4G31920 60.0 3.3e-80 296.2
Bda01g01967 BCT,CCT,ECH 1 272 Response Regulator Gene Family AT4G31920 50.7 5.1e-73 272.3
Bda11g00187 . 31 292 Response Regulator Gene Family AT4G31920 55.3 1.1e-72 271.2
Bda01g01795 . 34 292 Response Regulator Gene Family AT4G31920 55.4 2.5e-72 270.0
Bda08g00304 BCT 25 280 Response Regulator Gene Family AT4G31920 55.0 5.3e-70 262.3
Bda03g01158 BCT 71 284 Response Regulator Gene Family AT4G31920 59.3 5.7e-56 215.7
Bda01g01795 . 117 285 Response Regulator Gene Family AT1G67710 54.7 2.4e-41 166.8
Bda11g00187 . 117 285 Response Regulator Gene Family AT1G67710 54.1 7.1e-41 165.2
Bda09g00841 BCT,CCT,ECH 18 390 Response Regulator Gene Family AT2G25180 57.9 2.1e-101 366.7
Bda11g00187 . 36 297 Response Regulator Gene Family AT2G25180 57.3 4.1e-76 282.7
Bda01g01795 . 36 292 Response Regulator Gene Family AT2G25180 58.0 1.5e-75 280.8
Bda11g00187 . 97 334 Response Regulator Gene Family AT2G01760 58.3 4.2e-64 241.9
Bda01g01795 . 97 341 Response Regulator Gene Family AT2G01760 55.8 3.4e-61 232.3
Bda03g01158 BCT 100 333 Response Regulator Gene Family AT2G01760 53.1 2.0e-50 196.4
Bda11g00074 BCT,CCT,ECH 76 261 Response Regulator Gene Family AT2G01760 52.3 8.9e-46 181.0
Bda08g00304 BCT 27 271 Response Regulator Gene Family AT5G58080 60.4 4.8e-67 252.7
Bda03g01158 BCT 71 334 Response Regulator Gene Family AT5G58080 52.0 1.6e-54 211.1
Bda08g00304 BCT 26 251 Response Regulator Gene Family AT4G16110 73.5 8.8e-80 295.0
Bda11g00187 . 35 265 Response Regulator Gene Family AT4G16110 59.0 2.0e-68 257.3
Bda01g01795 . 35 265 Response Regulator Gene Family AT4G16110 59.0 1.0e-67 255.0
Bda03g01158 BCT 71 263 Response Regulator Gene Family AT4G16110 73.1 8.0e-65 245.4
Bda09g00841 BCT,CCT,ECH 8 249 Response Regulator Gene Family AT4G16110 59.0 1.1e-61 235.0
Bda11g01678 . 24 148 Response Regulator Gene Family AT3G48100 79.5 1.8e-51 199.1
Bda07g01573 . 32 160 Response Regulator Gene Family AT3G48100 72.1 2.9e-49 191.8
Bda10g01007 . 32 159 Response Regulator Gene Family AT3G48100 75.0 8.5e-49 190.3
Bda14g00828 . 24 175 Response Regulator Gene Family AT3G48100 63.0 6.3e-44 174.1
Bda15g00091 . 3 153 Response Regulator Gene Family AT3G48100 53.0 5.2e-38 154.5
Bda07g01573 . 1 163 Response Regulator Gene Family AT1G59940 66.5 1.3e-55 213.8
Bda10g01007 . 1 164 Response Regulator Gene Family AT1G59940 66.7 4.8e-55 211.8
Bda11g01678 . 1 150 Response Regulator Gene Family AT1G59940 67.5 3.0e-49 192.6
Bda14g00828 . 15 152 Response Regulator Gene Family AT1G59940 64.0 6.7e-41 164.9
Bda15g00091 . 8 149 Response Regulator Gene Family AT1G59940 58.5 1.4e-38 157.1
Bda07g01573 . 19 192 Response Regulator Gene Family AT1G10470 63.4 1.4e-54 209.9
Bda10g01007 . 28 190 Response Regulator Gene Family AT1G10470 67.5 4.5e-53 204.9
Bda11g01678 . 15 172 Response Regulator Gene Family AT1G10470 65.4 2.3e-49 192.6
Bda14g00828 . 15 168 Response Regulator Gene Family AT1G10470 60.6 1.8e-41 166.4
Bda15g00091 . 10 171 Response Regulator Gene Family AT1G10470 53.1 5.8e-37 151.4
Bda11g01678 . 24 148 Response Regulator Gene Family AT3G48100 79.5 1.8e-51 199.1
Bda07g01573 . 32 160 Response Regulator Gene Family AT3G48100 72.1 2.9e-49 191.8
Bda10g01007 . 32 159 Response Regulator Gene Family AT3G48100 75.0 8.5e-49 190.3
Bda14g00828 . 24 175 Response Regulator Gene Family AT3G48100 63.0 6.3e-44 174.1
Bda15g00091 . 3 153 Response Regulator Gene Family AT3G48100 53.0 5.2e-38 154.5
Bda11g01678 . 16 172 Response Regulator Gene Family AT5G62920 71.1 2.6e-53 205.3
Bda07g01573 . 30 160 Response Regulator Gene Family AT5G62920 71.8 4.3e-48 188.0
Bda10g01007 . 30 159 Response Regulator Gene Family AT5G62920 74.6 2.8e-47 185.3
Bda14g00828 . 24 174 Response Regulator Gene Family AT5G62920 65.8 2.6e-45 178.7
Bda15g00091 . 10 152 Response Regulator Gene Family AT5G62920 55.2 2.4e-38 155.6
Bda11g01678 . 5 172 Response Regulator Gene Family AT1G19050 65.3 9.2e-52 200.3
Bda10g01007 . 26 189 Response Regulator Gene Family AT1G19050 60.0 1.4e-44 176.4
Bda07g01573 . 31 205 Response Regulator Gene Family AT1G19050 56.0 2.4e-44 175.6
Bda14g00828 . 23 160 Response Regulator Gene Family AT1G19050 69.1 2.7e-43 172.2
Bda15g00091 . 8 154 Response Regulator Gene Family AT1G19050 53.7 6.4e-37 151.0
Bda15g00091 . 1 149 Response Regulator Gene Family AT2G41310 60.9 2.4e-45 179.1
Bda07g01573 . 33 166 Response Regulator Gene Family AT2G41310 58.2 2.8e-41 165.6
Bda10g01007 . 33 170 Response Regulator Gene Family AT2G41310 58.6 3.0e-40 162.2
Bda11g01678 . 19 147 Response Regulator Gene Family AT2G41310 59.4 7.5e-39 157.5
Bda15g00091 . 1 176 Response Regulator Gene Family AT3G57040 54.5 7.5e-50 194.1
Bda07g01573 . 31 167 Response Regulator Gene Family AT3G57040 58.2 1.8e-43 172.9
Bda10g01007 . 31 161 Response Regulator Gene Family AT3G57040 60.7 7.5e-42 167.5
Bda11g01678 . 23 147 Response Regulator Gene Family AT3G57040 61.0 4.1e-40 161.8
Bda14g00441 . 1 144 Response Regulator Gene Family AT3G57040 55.3 9.5e-37 150.6
Bda11g01678 . 21 172 Response Regulator Gene Family AT1G74890 67.5 4.6e-51 198.0
Bda10g01007 . 23 163 Response Regulator Gene Family AT1G74890 68.1 9.9e-46 180.3
Bda07g01573 . 25 162 Response Regulator Gene Family AT1G74890 66.7 1.3e-45 179.9
Bda14g00828 . 21 174 Response Regulator Gene Family AT1G74890 63.5 1.9e-44 176.0
Bda15g00091 . 4 154 Response Regulator Gene Family AT1G74890 53.0 3.1e-39 158.7
Bda10g01007 . 30 161 Response Regulator Gene Family AT2G40670 62.2 8.5e-40 160.2
Bda07g01573 . 30 157 Response Regulator Gene Family AT2G40670 61.1 1.1e-39 159.8
Bda11g01678 . 23 147 Response Regulator Gene Family AT2G40670 61.8 1.4e-37 152.9
Bda07g01573 . 16 157 Response Regulator Gene Family AT3G56380 57.7 5.0e-42 167.5
Bda10g01007 . 22 161 Response Regulator Gene Family AT3G56380 61.0 5.0e-42 167.5
Bda11g01678 . 16 147 Response Regulator Gene Family AT3G56380 59.0 1.1e-38 156.4
Bda11g00187 . 76 338 Response Regulator Gene Family AT3G16857 52.1 1.6e-70 264.2
Bda01g01795 . 76 337 Response Regulator Gene Family AT3G16857 52.1 1.3e-69 261.2
Bda08g00304 BCT 26 251 Response Regulator Gene Family AT4G16110 73.5 8.8e-80 295.0
Bda11g00187 . 35 265 Response Regulator Gene Family AT4G16110 59.0 2.0e-68 257.3
Bda01g01795 . 35 265 Response Regulator Gene Family AT4G16110 59.0 1.0e-67 255.0
Bda03g01158 BCT 71 263 Response Regulator Gene Family AT4G16110 73.1 8.0e-65 245.4
Bda09g00841 BCT,CCT,ECH 8 249 Response Regulator Gene Family AT4G16110 59.0 1.1e-61 235.0
Bda11g00074 BCT,CCT,ECH 15 264 Response Regulator Gene Family AT4G31920 60.0 3.3e-80 296.2
Bda01g01967 BCT,CCT,ECH 1 272 Response Regulator Gene Family AT4G31920 50.7 5.1e-73 272.3
Bda11g00187 . 31 292 Response Regulator Gene Family AT4G31920 55.3 1.1e-72 271.2
Bda01g01795 . 34 292 Response Regulator Gene Family AT4G31920 55.4 2.5e-72 270.0
Bda08g00304 BCT 25 280 Response Regulator Gene Family AT4G31920 55.0 5.3e-70 262.3
Bda03g01158 BCT 71 284 Response Regulator Gene Family AT4G31920 59.3 5.7e-56 215.7
Bda01g01795 . 117 285 Response Regulator Gene Family AT1G67710 54.7 2.4e-41 166.8
Bda11g00187 . 117 285 Response Regulator Gene Family AT1G67710 54.1 7.1e-41 165.2
Bda09g00841 BCT,CCT,ECH 18 390 Response Regulator Gene Family AT2G25180 57.9 2.1e-101 366.7
Bda11g00187 . 36 297 Response Regulator Gene Family AT2G25180 57.3 4.1e-76 282.7
Bda01g01795 . 36 292 Response Regulator Gene Family AT2G25180 58.0 1.5e-75 280.8
Bda11g00187 . 97 334 Response Regulator Gene Family AT2G01760 58.3 4.2e-64 241.9
Bda01g01795 . 97 341 Response Regulator Gene Family AT2G01760 55.8 3.4e-61 232.3
Bda03g01158 BCT 100 333 Response Regulator Gene Family AT2G01760 53.1 2.0e-50 196.4
Bda11g00074 BCT,CCT,ECH 76 261 Response Regulator Gene Family AT2G01760 52.3 8.9e-46 181.0
Bda08g00304 BCT 27 271 Response Regulator Gene Family AT5G58080 60.4 4.8e-67 252.7
Bda03g01158 BCT 71 334 Response Regulator Gene Family AT5G58080 52.0 1.6e-54 211.1
Bda03g00757 . 65 297 Response Regulator Gene Family AT5G60100 58.7 6.3e-68 255.0
Bda14g00095 . 41 303 Response Regulator Gene Family AT5G60100 54.4 7.2e-64 241.5
Bda08g00081 . 24 157 Response Regulator Gene Family AT5G60100 61.9 1.1e-43 174.5
Bda14g00095 . 175 316 Response Regulator Gene Family AT5G02810 59.1 2.7e-40 163.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015896 2 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 9
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16567 PF00072 Response_reg 9.50E-22 CL0304 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00187 Bda_Chr11 FPKM 12.663627 11.36003 5.83694 5.755252 1.193803 1.544927 1.669628 1.798092 1.774334