Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00188 ATGGCGATGCCGAAGGAAGAAGAAGAGGAAGAGGAGAAGGTTCGGAGCTCTGGAAAGAGATTGAAATGCACCGTAGATGAAGACGATGAAGACGATGAAGACGGCGAAGAACGATTTTGTAGCGAAGACGAACAAAGGGACGATTTTCCCCTGAAACCTGGTTTGTTTTACTATCCAATCACCCCCACTTCCTTCGTCGTCTCCGATGCTTTGGAGACTGATTTTCCTATCATTTATGTCAACAAAGTCTTCGAGATCTTCACTGGATATCGCGCTGATGAGGTCCTTGGTCGAAATTGTCGGTTCTTACAAAATAGGGATCCTAGTGCCCAAAGGCGACATCCTCTGGTAGATCCAGTTGTTGTTTCTGAAATAAGAAGATGCCTTGAGGAGGGAATTGAATTTCAAGGAGAGCTTCTTAATTTCAGGCAAGATGGGACACCCTTGGTGAACAGGCTGAGACTTGCACCCATACACGACAATGATGGAATTGTGACACATGTAATAGGGATTCAAGTATTTTCTGAAGCAAAATTAGATCTGAACCGGATTTCATATCCAGTTTTTAAAGAGACTTGCAATCAATATAATGATCATTCGGGAAAATATACTTCTCTGACTGGGCGATTACCATTCATCCAACGGGAGGAGTTATGTGGGATGCTTCAGCTCTCTGATGAAGTCTTGGCCCACAACATTCTATCTCGCTTGACACCGAGAGATGTTGCATCTGTTGGATCTGTGTGCCGAAGAATTCGTCAGTTGACTAAAAATGAGCATCTAAGGAAGATGGTTTGCCAAAATGCGTGGGGAAGGGAAGTCACTGGCACATTGGAACTAATTACTAAGAAGTTAGGTTGGGGTCGTTTGGCAAGGGAACTGACGACCCTCGAGGCTGTTTGCTGGAGGAAACTGACAGTTGGGGGTGCTGTTAAGCCTTCAAGGTGCAATTTTAGTGCTTGTGCTGCTGGAAACAGACTTGTGTTATTTGGAGGAGAAGGCGTTAATATGCAGCCTATGGATGATACATTTGTACTTAATCTTGATTCTGCCCATCCCGAGTGGCGTAGAGTGATTGTAAAATCATCCCCACCAGGGCGTTGGGGCCATAGTCTCTCATGTTTGAATGGTTCTTGGTTGGTGGTATTCGGAGGATGTGGGAGAGAAGGATTACTAAATGATGTCTTTGTACTTGACTTAGACGCCAAACAGCCGACATGGAAAGAAATTTCTGGTGGAACTCCTCCACTCCCTCGATCATGGCATAGCTCTTGCACGATTGAAGGATCTAAACTAGTCGTCTCCGGTGGATGTACAGACGCAGGAGTTCTTCTCAGTGACACATATTTGTTGGATCTTACAAAAGATAAGCCGACCTGGAAAGAGATTCCGACTTCGTGGACGCCCCCATCAAGGTTAGGACATTCTCTTTCGGTATATAGTAGGACAAAAATTCTCATGTTTGGTGGGCTGGCCAAAAGTGGGCACTTACGGTTGAGATCGGGTGACGCTTACACCATTGATTTGGAAGAGGAAATGCCTCAGTGGAGGCTGCTCGAGTGTAATACATTCACTGGCTTAGGCAGCCAAAGCGTTGCCGTTCCTCCTCCTAGACTCGATCATGTAGCGGTGAGCATGCCCTGTGGCAGGATCATAATATTCGGAGGTTCCATTGCGGGATTGCACTCACCTTCTCAGCTCTACCTATTAGACCCTTCGGAAGAAAAGCCATCGTGGAGGATACTAAACGTCCCCGGCCAACCACCCAAATTTGCATGGGGACATAGCACCTGTGTGGTCGGAGGTACTCGAGTTCTGGTTTTGGGAGGCCACACTGGGGAGGAGTGGATACTCAATGAGTTGCATGAACTACGCTTGGCAAGCAGACAAGACTGA 1896 46.57 MAMPKEEEEEEEKVRSSGKRLKCTVDEDDEDDEDGEERFCSEDEQRDDFPLKPGLFYYPITPTSFVVSDALETDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQNRDPSAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRQDGTPLVNRLRLAPIHDNDGIVTHVIGIQVFSEAKLDLNRISYPVFKETCNQYNDHSGKYTSLTGRLPFIQREELCGMLQLSDEVLAHNILSRLTPRDVASVGSVCRRIRQLTKNEHLRKMVCQNAWGREVTGTLELITKKLGWGRLARELTTLEAVCWRKLTVGGAVKPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDSAHPEWRRVIVKSSPPGRWGHSLSCLNGSWLVVFGGCGREGLLNDVFVLDLDAKQPTWKEISGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTKDKPTWKEIPTSWTPPSRLGHSLSVYSRTKILMFGGLAKSGHLRLRSGDAYTIDLEEEMPQWRLLECNTFTGLGSQSVAVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLYLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELRLASRQD 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2414642 2416908 + Bda004905.1 Bda11g00188 15296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00188 631 Pfam Galactose oxidase, central domain 380 427 - -
Bda11g00188 631 Pfam Galactose oxidase, central domain 429 480 - -
Bda11g00188 631 PANTHER ADAGIO PROTEIN 3 12 630 - -
Bda11g00188 631 SUPERFAMILY F-box domain 219 287 IPR036047 GO:0005515
Bda11g00188 631 SUPERFAMILY Galactose oxidase, central domain 302 619 IPR011043 -
Bda11g00188 631 MobiDBLite consensus disorder prediction 1 46 - -
Bda11g00188 631 MobiDBLite consensus disorder prediction 27 41 - -
Bda11g00188 631 ProSiteProfiles PAS repeat profile. 77 132 IPR000014 -
Bda11g00188 631 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 12 630 - -
Bda11g00188 631 Gene3D PAS domain 60 183 - -
Bda11g00188 631 MobiDBLite consensus disorder prediction 1 26 - -
Bda11g00188 631 Pfam Kelch motif 539 586 IPR011498 GO:0005515
Bda11g00188 631 Gene3D - 217 265 - -
Bda11g00188 631 SUPERFAMILY PYP-like sensor domain (PAS domain) 69 172 IPR035965 -
Bda11g00188 631 Gene3D - 291 518 IPR015915 GO:0005515
Bda11g00188 631 Gene3D - 519 630 IPR015915 GO:0005515
Bda11g00188 631 CDD PAS 61 171 IPR000014 -
Bda11g00188 631 TIGRFAM sensory_box: PAS domain S-box protein 74 171 IPR000014 -
Bda11g00188 631 Pfam F-box domain 222 261 IPR001810 GO:0005515
Bda11g00188 631 Pfam Galactose oxidase, central domain 315 365 - -
Bda11g00188 631 Pfam PAS domain 71 172 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00188 K12116 FKF1; flavin-binding kelch repeat F-box protein 1 - zju:107429253 1098.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01913 Bda-Chr1:55328760 Bda11g00188 Bda-Chr11:2414642 0 dispersed
Bda11g00188 Bda-Chr11:2414642 Bda12g01030 Bda-Chr12:42030033 4.63E-13 dispersed
Bda11g00188 Bda-Chr11:2414642 Bda11g01005 Bda-Chr11:9846662 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g502 . Blo16g00757 . Bda11g00188 Bpe13g01006 . . . Cmo04g01103 . Cma04g01032 Cma04g00079 Car04g00963 Car04g00078 Sed04g2999 . . Bhi07g00405 Tan04g1496 Cmetu10g0634 Lac13g1318 Hepe01g0598 . . Cla07g00531 Cam07g0573 Cec07g0622 Cco07g0597 Clacu07g0576 Cmu07g0611 Cre07g0943 . . Cone6ag0358 Cone9ag0388 Lsi04g01097 . . . . . . Bda11g00188 . . . Bma06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008842 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00188 Bda_Chr11 FPKM 9.543956 8.058189 13.211613 12.895164 11.172672 9.67137 12.192852 7.743139 8.693326