Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00212 ATGGAATTTGATCGCATTGAAAGCTTGCCATCGTCGGATGTGATGGAAGAGGGCGAGATCCATCAACATCGTCGTCAGTTTTCTTCCAATTCCAAGCCTCAAACCGTCAACAGCCCTCATTTTCACCTTACCACCACCAATGTTCACGAGCTTCTTGAGTGCCCCGTCTGTACGAATTCTATGTACCCTCCAATTCATCAGTGCCACAATGGGCATACTCTTTGTTCAACCTGTAAAACAAGGGTGCACAATCGATGCCCGACGTGTAGACAAGAGCTGGGCGACATAAGGTGTTTAGCATTGGAAAAAGTAGCCGAATCGCTTGAATTGCCTTGCAAATACTGTTCGTTGGGATGCCCCGAGATATTTCCCTACTACAACAAGCTTAAACATGAATCTGTGTGTAATTTTAGACCATACAGTTGTCCTTATGCCGGTTCTGACTGTGCTATAGTTGGAGATATTCCCTTCCTTGTTTCTCATCTCAGAGACGATCACAAGGTCGACATGCATTCGGGATGCACTTTCAATCATCGCTATGTCAAGTCCAATCCTCGAGAAGTAGAAAACGCAACATGGATGTTAACTGTATTCAACTGCTTTGGTCAGTACTTTTGTCTCCATTTTGAAGCATTCCAACTGGGTATGGCTCCTGCTTATATGGCGTTTCTTCGATTCATGGGCAGCGAAGCAGAAGCCAGAAACTACAGCTACAGCCTGGAAGTTGGGGGAAGTGGAAGAAAACTCATTTGGGAGGGGAGCCCCAGAAGCATTAGGGACAGTCACGAGAAGGTGAGGGACAGCCACGACGGCCTGATTATTCAGCGTAACATAGCGCTTTTCTTCTCGGGCGGGGAGAGGAAAGAGCTGAAGCTCCGAGTGACCGGCCGGATATGGAAAGAACAGCCCAACTCGGATGGTGGACCCTGCATACCTATCCTCTTTAGCCAAGAATGA 957 47.44 MEFDRIESLPSSDVMEEGEIHQHRRQFSSNSKPQTVNSPHFHLTTTNVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYCSLGCPEIFPYYNKLKHESVCNFRPYSCPYAGSDCAIVGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFNCFGQYFCLHFEAFQLGMAPAYMAFLRFMGSEAEARNYSYSLEVGGSGRKLIWEGSPRSIRDSHEKVRDSHDGLIIQRNIALFFSGGERKELKLRVTGRIWKEQPNSDGGPCIPILFSQE 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2638936 2641882 + Bda004933.1 Bda11g00212 15320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00212 318 CDD RING-HC_SIAHs 52 90 - -
Bda11g00212 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 306 - -
Bda11g00212 318 ProSiteProfiles Zinc finger SIAH-type profile. 107 167 IPR013010 GO:0008270
Bda11g00212 318 ProSiteProfiles Zinc finger RING-type profile. 54 90 IPR001841 -
Bda11g00212 318 Pfam Seven in absentia protein family 96 295 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bda11g00212 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 96 IPR013083 -
Bda11g00212 318 CDD Sina 168 296 - -
Bda11g00212 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 160 IPR013083 -
Bda11g00212 318 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 295 IPR008974 GO:0005515
Bda11g00212 318 SUPERFAMILY RING/U-box 38 93 - -
Bda11g00212 318 MobiDBLite consensus disorder prediction 1 26 - -
Bda11g00212 318 SUPERFAMILY TRAF domain-like 107 299 - -
Bda11g00212 318 MobiDBLite consensus disorder prediction 1 39 - -
Bda11g00212 318 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g01095 Bda-Chr5:59295629 Bda11g00212 Bda-Chr11:2638936 4.26E-153 dispersed
Bda06g00784 Bda-Chr6:10882064 Bda11g00212 Bda-Chr11:2638936 5.76E-112 dispersed
Bda07g01094 Bda-Chr7:12823184 Bda11g00212 Bda-Chr11:2638936 1.16E-22 dispersed
Bda09g00286 Bda-Chr9:3537484 Bda11g00212 Bda-Chr11:2638936 5.12E-28 dispersed
Bda11g00212 Bda-Chr11:2638936 Bda15g00095 Bda-Chr15:3204074 6.92E-169 dispersed
Bda11g00212 Bda-Chr11:2638936 Bda05g00126 Bda-Chr5:5975431 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00212 K04506 - pvy:116121280 573.163