Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00244 ATGGATCGGAGGGACCTTTCGGGGATGTCTGGCTCGCAATCATTTTATATGCAGAGGGGAATGACTAGTGCTGGGTCTAATCCTCATCCTGGAATGCAAGGGCCTCCTCAAGTTCTTCGGTCGATAACCAGTCAAACCACTCATATGCATTCCAATGTCGGAGGAAACACAATTGGGTCGGCATTACAGGTCGAACCGTCCCAACCGATGACAGCTCATGGCATCAACTTGGGTGCACAGTCAGTAATGCCATCGACCGAGCCGATGAAGAGGCGGAGGGGGAGACCTCGAAAGTATGGCTCGGACGGGACTGTCTCGTTGGCTCTGTCCCCCTCGGCATCAACCAATACGGGAATGGTATCGCCTCTCATGAAGCGGGGAAGAGGCCGACCTCCCGGGACCGGAAGGAAACAACAATTAGCTTCTCTTGGTGAATGGCTTTCTGGTTCAGCTGGGATGGGTTTCACTCCCCATATTATTTCCATTGGAGTGGGAGAGGACATTGCTGCAAAGATTATGTCGTTTTCGCAGCAGGGGCCGAGAGCGATATGCATTTTATCGGGCAATGGTGCTGTTTCCACCGTGACTCTTCGTCAGCCTTCGAATTCCGGTGGCACAGTTACGTACGAGGGACGATTTGAGATTGTCTGTCTGTCTGGATCGTACCTACTCAACGACGCCATCGGATCTCACAACCGGAATGGTGGTTTAAGCGTCTCCCTTGCCAGTCCTGATGGTCATGTGATTGGCGGCAGGGTTGGAGGGGTTCTTATTGCTGCAAGCCCCGTCCAGGTGATTTTGGGAAGCTTCGTGTGGGGTGAATCGAGAACTAAGAACAAAAAGAGGGAAGCTTCTGAAGGCGTGATAGACTCAGACCAGCAGTCGTCAGAGAATGCGGCTGGGTTGAACACTGCCGGTCTTGGCCCGGCTTCCTCCCCGATCGGAGTTTGGCCAGCTCCACAGACGGTGGATATGCGAAACGCCCACATCGACATTGACTTGATGAGAGGATAA 1014 53.16 MDRRDLSGMSGSQSFYMQRGMTSAGSNPHPGMQGPPQVLRSITSQTTHMHSNVGGNTIGSALQVEPSQPMTAHGINLGAQSVMPSTEPMKRRRGRPRKYGSDGTVSLALSPSASTNTGMVSPLMKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHIISIGVGEDIAAKIMSFSQQGPRAICILSGNGAVSTVTLRQPSNSGGTVTYEGRFEIVCLSGSYLLNDAIGSHNRNGGLSVSLASPDGHVIGGRVGGVLIAASPVQVILGSFVWGESRTKNKKREASEGVIDSDQQSSENAAGLNTAGLGPASSPIGVWPAPQTVDMRNAHIDIDLMRG 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2898066 2899753 - Bda004966.1 Bda11g00244 15352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00244 337 MobiDBLite consensus disorder prediction 83 139 - -
Bda11g00244 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 43 296 IPR039605 GO:0003680
Bda11g00244 337 Pfam Plants and Prokaryotes Conserved (PCC) domain 157 271 IPR005175 -
Bda11g00244 337 ProSiteProfiles PPC domain profile profile. 151 292 IPR005175 -
Bda11g00244 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 43 296 - -
Bda11g00244 337 CDD DUF296 156 270 IPR005175 -
Bda11g00244 337 SMART AT_hook_2 125 137 IPR017956 GO:0003677
Bda11g00244 337 SMART AT_hook_2 90 102 IPR017956 GO:0003677
Bda11g00244 337 MobiDBLite consensus disorder prediction 281 304 - -
Bda11g00244 337 Gene3D - 157 292 - -
Bda11g00244 337 SUPERFAMILY AF0104/ALDC/Ptd012-like 155 273 - -
Bda11g00244 337 MobiDBLite consensus disorder prediction 105 121 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda08g00520 Bda11g00244 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00382 Bda-Chr1:29697558 Bda11g00244 Bda-Chr11:2898066 6.02E-70 dispersed
Bda11g00244 Bda-Chr11:2898066 Bda15g00752 Bda-Chr15:11110255 4.02E-67 dispersed
Bda07g00515 Bda-Chr7:6608187 Bda11g00244 Bda-Chr11:2898066 1.45E-74 transposed
Bda08g00520 Bda-Chr8:5238190 Bda11g00244 Bda-Chr11:2898066 7.59E-92 transposed
Bda12g00353 Bda-Chr12:4068711 Bda11g00244 Bda-Chr11:2898066 1.66E-48 transposed
Bda11g00244 Bda-Chr11:2898066 Bda13g00351 Bda-Chr13:4380526 7.15E-126 wgd
Bda11g00244 Bda-Chr11:2898066 Bda06g00109 Bda-Chr6:1516596 3.36E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00244 - - qsu:112035696 449.899