Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00250 TTTTCATTAATGGCTCTTGTCAATCCTATTTTGCCCTCTGTGCCTGCGATTATGTATCCTGACATCTCAGAAATAATGGCTACTGGAAGCTTAGAGATCTTGGAGCGGCCACTTTCGTCTATTATCGAAGATATTGTTTATGTTGCGGTTGGAAAACAAGTGAAAGAGAGCAAGCTCACTTTGATTTATGCTCTGCAAAACTCAGGTGGGAAGAAGATCTGCATCATTCATGTCCATGAACCTGCCCATATGATACCCTTAATGGGAACAAGGTTTCCAGCAAACACATTGAAGGACCAGGAAGTGAGAGCTTACCGAGAAATTGAGAGACAGAGCATGCATAAGGTCCTCGATGAGTATCTTCTTCTCTGCCGTCGCACTGGGGCTCGGGCAGAGAAACAATATACTGAATCCGATAGCATTGAGAAGGGAATTATTGAACTCATTTCTCAGTTTGGGATTCGAAAACTTGTGATGGGAGCTGCCGCAGATAAACACTATTCAAGGAGAATGGTTGATATTAGATCAAGGAAAGCCAATTATGTTCGCTTGCAAGCTCCAGATTTTTGTCACATCCAATTTATTTGCAAGGGAAACCTTATTCACACCAGGGAAGGTAATCAACATGGAGCATGTGCGCAAGCTGTATCTCCTCCATCAGTTGCACCAGTTCTATCGCCATCTGTACCACCAAGCCTGATCCCCCAAGCCTCACACAGCCACTGGAGATCATTATCCGCCTCAGTTGCACCTATCAATGGAATGAAAAATGGTAATTATCCAAGAGCAAAATCCATGCATGGCGATTATGCAAGGGGGAACATAATTCATCCTGATTCTCCAGTTATTGACGTTCTTCAAAGTCCAATGGGGTCTCCTCACCGGGCTTTGGAAGATTATGATCGATTATTTCGGAGAAGCCCTTCTGAGCATTCAGTTGCTACATCAGCTTCTTGTAGTGGAGAAAATGATATCATGCAAAATTATAAAATTTCATCATGTTTTCAGGATGAATGCACAGATGAAAATCTTTATGAACAACTTAAACAGACAATTACAGAAGCCACAAATGCCAAGCGTGAAGCTTTTGACGAGGCCCAAAGACGTGGACATGCTGAAAAAGATGCCATTGATGCTATACGCAGGGCTAGAGTTGCAGAAAGTTTATATGCCGTGGAGTTGAGACAAAAGAAAGAACTTGAAGATGCACTAGCAGAAGAGAAGGAAAAACTCAATGACATGAAGAATCAATGTGAAAAAGTAATGGAAGAACTCAGAATTTCTCAAATGCGAAGGTCAAGTCTTGAGAACCAAATTGCAGAATCTGATCAGACTGCTAAGGAGTTGGAACAAAAAATTATTTCTGCTGTTGACCTGTTAACAAAATACAAAATCGAACGAGATGAGTTACAGAGGCTGCGGGACAGTGCTCTAAGTGAAGCACAGGAGCTTAGGAGAGCACTTGGAGAGAACTCGAGCACGCGCATGCCCCAGTTCTTTTCTGAGTTCTCATTTTCAGAAATTGAAGTGGATGTATTGAGTAAGATGAGACATCCAAATCTCGTCACCCTCATTGGAGCTTGCCCAGAAGCCTGGATTCTAGTCTATGAATATCTTTCAAACGGAAGCCTTGAAGATAGGCTGAGCTGCAAGGATAATAGTCCGCCATTATCATGGAAATGTCGAATTCGCATTGCCACAGAGTTGTGCTCGGCCATTATGTTTCTTCACTCAGGTAAACCCCACAGCATAATTCATGGTGATTTGAAACCTGCAAATTTATTACTTGATTCTAATTATGGCTGCAAAGTGGGAGACTTTGGAATCTGTCGCCTCGTTACTCATAACAATGGGTCAAGCAACAATGTGACTCATATTTACCAAACTGACCCTAAGGGAACTTTTGCATACATGGATCCAGAGTTTGTTTCGACAGGGGAGCTTACTGTAAAATCCGATGTGTATTCGTTTGGAATCATATTACTACGGCTACTGACAGGAAGATCAGCCTTGAGGATAGCAAAGGAAGTTCAATATGCATTGGAAAATGGAAATTTGAAAACCCTTTTAGATCCTTTAGCCGGAGACTGGCCATTTGTGCAGGCCGAGCAGTTGGCTCGTTTGGCACTTAGATGTTGTGATGTAAATCGTCGAAGCAGACCAGACCTTGCGGTGGATGTTTGGAAAGTACTTGAGCCTATGAAAGCCTCGTGCGGGGGCTCTTTGTCATTTAGTTTGGGTTCTGATGAGCATTTTCAACCTCCTGGCTATTTTATTTGTCCAATCTTTCAGGAAGTTATGCAGGATCCGCAAGTGGCTGCAGATGGTTTTACATACGAAGCAGAGGCTTTGAAAGGATGGCTGGAGAGCGGGCATGACACTTCGCCAATGACAAACCTTAAGCTTGAAAACTCCACTCTCATTCCCAATCGCGCTCTGCGATCTGCAATTCAAGAATGGCTACAAAACCGTTAA 2475 42.91 FSLMALVNPILPSVPAIMYPDISEIMATGSLEILERPLSSIIEDIVYVAVGKQVKESKLTLIYALQNSGGKKICIIHVHEPAHMIPLMGTRFPANTLKDQEVRAYREIERQSMHKVLDEYLLLCRRTGARAEKQYTESDSIEKGIIELISQFGIRKLVMGAAADKHYSRRMVDIRSRKANYVRLQAPDFCHIQFICKGNLIHTREGNQHGACAQAVSPPSVAPVLSPSVPPSLIPQASHSHWRSLSASVAPINGMKNGNYPRAKSMHGDYARGNIIHPDSPVIDVLQSPMGSPHRALEDYDRLFRRSPSEHSVATSASCSGENDIMQNYKISSCFQDECTDENLYEQLKQTITEATNAKREAFDEAQRRGHAEKDAIDAIRRARVAESLYAVELRQKKELEDALAEEKEKLNDMKNQCEKVMEELRISQMRRSSLENQIAESDQTAKELEQKIISAVDLLTKYKIERDELQRLRDSALSEAQELRRALGENSSTRMPQFFSEFSFSEIEVDVLSKMRHPNLVTLIGACPEAWILVYEYLSNGSLEDRLSCKDNSPPLSWKCRIRIATELCSAIMFLHSGKPHSIIHGDLKPANLLLDSNYGCKVGDFGICRLVTHNNGSSNNVTHIYQTDPKGTFAYMDPEFVSTGELTVKSDVYSFGIILLRLLTGRSALRIAKEVQYALENGNLKTLLDPLAGDWPFVQAEQLARLALRCCDVNRRSRPDLAVDVWKVLEPMKASCGGSLSFSLGSDEHFQPPGYFICPIFQEVMQDPQVAADGFTYEAEALKGWLESGHDTSPMTNLKLENSTLIPNRALRSAIQEWLQNR 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2944523 2949967 + Bda004973.2 Bda11g00250 15358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00250 824 Pfam Protein kinase domain 509 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda11g00250 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672|GO:0006468
Bda11g00250 824 Pfam U-box domain 755 823 IPR003613 GO:0004842|GO:0016567
Bda11g00250 824 CDD RING-Ubox_WDSUB1_like 758 799 - -
Bda11g00250 824 PANTHER OS02G0152300 PROTEIN 41 509 - -
Bda11g00250 824 Coils Coil 345 365 - -
Bda11g00250 824 SMART serkin_6 433 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda11g00250 824 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 33 509 820 - -
Bda11g00250 824 CDD STK_N 45 198 - -
Bda11g00250 824 ProSiteProfiles Protein kinase domain profile. 467 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda11g00250 824 PANTHER OS02G0152300 PROTEIN 509 820 - -
Bda11g00250 824 SUPERFAMILY RING/U-box 748 822 - -
Bda11g00250 824 SMART Ubox_2 757 820 IPR003613 GO:0004842|GO:0016567
Bda11g00250 824 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 753 824 IPR013083 -
Bda11g00250 824 Gene3D Transferase(Phosphotransferase) domain 1 543 740 - -
Bda11g00250 824 SUPERFAMILY Protein kinase-like (PK-like) 507 723 IPR011009 -
Bda11g00250 824 ProSiteProfiles U-box domain profile. 753 824 IPR003613 GO:0004842|GO:0016567
Bda11g00250 824 Gene3D Phosphorylase Kinase; domain 1 482 542 - -
Bda11g00250 824 Coils Coil 390 487 - -
Bda11g00250 824 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 33 41 509 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00250 Bda-Chr11:2944523 Bda11g01037 Bda-Chr11:10117529 3.75E-83 dispersed
Bda09g01505 Bda-Chr9:46821234 Bda11g00250 Bda-Chr11:2944523 5.72E-147 transposed
Bda09g01575 Bda-Chr9:47251319 Bda11g00250 Bda-Chr11:2944523 5.86E-09 transposed
Bda11g01639 Bda-Chr11:50355917 Bda11g00250 Bda-Chr11:2944523 2.00E-15 transposed
Bda14g00799 Bda-Chr14:6159525 Bda11g00250 Bda-Chr11:2944523 3.49E-15 transposed
Bda11g00250 Bda-Chr11:2944523 Bda05g00084 Bda-Chr5:4040675 9.47E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69888 PF00069 Pkinase 3.00E-32 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00250 - - mnt:21395628 941.799