Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00254 ATGGCTGGAATTAGGTTATCTATGTTGAAGAGGCCACTGAGGGATTGGAAGCCACGTTCCTTTCAATGTTTCGAGTATATTGAATGTGGAAATTATGCTCATCGTCTTCGTGTAACAGTCAGATCATCGTTTGCTCTTCTAGATCACAAGTATCACTCAACTCTGAAGTCTGAAAATATTGCCACTACCCATTCCGGAGCAGCATGTATAGAACCTCTGGCTGCCAAAAACTATTATAAAACCAAACCCTTGACTGCATTTTCACTCATGCGTTCAAATTCACAATTACGAAATACTGTTCCTCTTTCTATGTCAAACCCACTATATAATTATCGATCATATTCATCATCATCTGGTAATAAAGTGGGGGACTACAGAGATGTGGGAGTTAAGGCAGCGTCTGGCACTGATGAAGGGGATGTTAATACCACGAGCATTCTTGGAGGTGATTGGCATGAAAAAGTTAAGGATGCTTATCAAAGTGCTGTAGAGGCTGTATCATTTTCTGGGCAGAGGGCAAAAGAAGTATCTGATGAATGGACACCTTATATTGATCAATTGTTTGATGCACATCCATATCTCACAAATGTGATTGTTCCGGTGAGTTCTACATTGACTGCCTCCGTTTTGGCGTGGGTGGTGATGCCTAAGGTGTTGAGAAGATTCCATAAGTATGCAACATCAGGTCCGGCTGCTCTTCTCTATGGCAGTCTATTAGGAGAACCAATTCCTTACGAGAAGACCTTTTGGGGTGCCTTGGAGGACCCCGTTCGATACCTTACGACGTTCATTGCATTCACGCAAATTGGCATGATGGTAGCACCAACAAGTATAGCATCGCAATATGTTATACAGGCCTCCAGGGGAGCAGTTATTGTATCCTTGGTTTGGTTTTTGTATCGATGGAAAACAAATGTGCTAACCCGTGCATTGGCTACAAAAAATGCGGCAGGGTTTGAACGGGATAGGTTACTGGCTCTGGATAAACTTTCATCCATTGGACTATTTGTCCTTGGCTTAATGGCTTTTGCAGAAGCTTGTGGTGTGGCTGTTCAGTCTATTCTTACTGTTGGTGGAATTGGAGGAGTCGCTACTGCTTTTGCTGCAAAGGACGTCCTCGGAAATGTCCTTAGTGGTTTAGTCATGCAATTTTCGAAGCCCTTCTCAATTGGAGACACAATAAAGGCTGGATCGATAGAAGGGCAGGTGGTTGAAATGGGACTAACGACGACATCATTGCTTAGTGCTGAGAAATTTCCCGTTATCGTTCCTAATTCGCTGTTCTCTAGCCAGGTTATAACGAACAAATCACGAGCTCAATGGCGATCGATGACCACTAAAATCCCTCTGCAAGTTGATGATTTCAGTAAGATTGCTCAAATAGGAGAAGAGATAAAGAGTATGCTAAGATCAAACCCAAATGTGTTTTTGGAGAAAGAAGCTCCTTATTGCTATCTCTCCCGCGTTGAAAGTTTGTTTTCTGAGCTAACTCTCGGCTACAACCTCAAACATATGAAAAGAGACGAATTATACTCGACCGAGCAAGAGATTCTCCTCCGATCAGTGCAAATCATCAAAGAACATGGCGTTTCGTTGGGCAGCACGGTCACCGGTTAA 1617 43.04 MAGIRLSMLKRPLRDWKPRSFQCFEYIECGNYAHRLRVTVRSSFALLDHKYHSTLKSENIATTHSGAACIEPLAAKNYYKTKPLTAFSLMRSNSQLRNTVPLSMSNPLYNYRSYSSSSGNKVGDYRDVGVKAASGTDEGDVNTTSILGGDWHEKVKDAYQSAVEAVSFSGQRAKEVSDEWTPYIDQLFDAHPYLTNVIVPVSSTLTASVLAWVVMPKVLRRFHKYATSGPAALLYGSLLGEPIPYEKTFWGALEDPVRYLTTFIAFTQIGMMVAPTSIASQYVIQASRGAVIVSLVWFLYRWKTNVLTRALATKNAAGFERDRLLALDKLSSIGLFVLGLMAFAEACGVAVQSILTVGGIGGVATAFAAKDVLGNVLSGLVMQFSKPFSIGDTIKAGSIEGQVVEMGLTTTSLLSAEKFPVIVPNSLFSSQVITNKSRAQWRSMTTKIPLQVDDFSKIAQIGEEIKSMLRSNPNVFLEKEAPYCYLSRVESLFSELTLGYNLKHMKRDELYSTEQEILLRSVQIIKEHGVSLGSTVTG 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2971275 2974655 + Bda004977.1 Bda11g00254 15362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00254 538 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 106 536 - -
Bda11g00254 538 Gene3D - 282 386 - -
Bda11g00254 538 Pfam Mechanosensitive ion channel 329 531 IPR006685 GO:0016020|GO:0055085
Bda11g00254 538 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 106 536 - -
Bda11g00254 538 Gene3D - 387 435 IPR023408 -
Bda11g00254 538 SUPERFAMILY Sm-like ribonucleoproteins 371 436 IPR010920 -
Bda11g00254 538 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 288 370 IPR011014 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00254 Bda-Chr11:2971275 Bda13g01360 Bda-Chr13:36001522 1.13E-10 dispersed
Bda11g00254 Bda-Chr11:2971275 Bda04g00117 Bda-Chr4:2654404 9.11E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00254 K22047 - csin:114308416 630.557