Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00323 ATGGCACTTTGTAATAAGCTTGGGAGCTTCTTTAGACAGACTATTTCTCAGAATGGACCAGCTTCAATGACGCCTATGCTTAATTCTGCTCGCTACATGTCTTCAAAGCTTTTTATTGGAGGTCTTTCATATGGAACTGATGATCAATCTCTCAGGGATGCGTTTTCATCTTTTGGTGATGTTGTTGATGCAAAGGTGATTACTGATAGAGACACAGGCAGGTCTCGTGGATTTGGGTTTGTCAACTTTTCGGACGATGAATCTGCTAGCTCTGCAATGTCTGCCATGGATGGTCAGGAGCTTAATGGGCGAAACATTCGAGTGAGTTTGGCAAATGATAGACCAGCTGCTCCTCGTGGTTATGGTGGTGGTGGTGGTTTTCGAGGCGATGGAGGGTACAGAGGTGGGAATTCTAGCTATTAA 423 44.68 MALCNKLGSFFRQTISQNGPASMTPMLNSARYMSSKLFIGGLSYGTDDQSLRDAFSSFGDVVDAKVITDRDTGRSRGFGFVNFSDDESASSAMSAMDGQELNGRNIRVSLANDRPAAPRGYGGGGGFRGDGGYRGGNSSY 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3570926 3571977 - Bda005049.1 Bda11g00323 15431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00323 140 SMART rrm1_1 36 109 IPR000504 GO:0003723
Bda11g00323 140 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 137 - -
Bda11g00323 140 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 107 IPR000504 GO:0003723
Bda11g00323 140 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 137 - -
Bda11g00323 140 MobiDBLite consensus disorder prediction 111 140 - -
Bda11g00323 140 Gene3D - 17 140 IPR012677 -
Bda11g00323 140 SUPERFAMILY RNA-binding domain, RBD 34 138 IPR035979 GO:0003676
Bda11g00323 140 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00323 - - - qlo:115950521 167.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00694 Bda-Chr6:9558028 Bda11g00323 Bda-Chr11:3570926 9.18E-11 dispersed
Bda11g00323 Bda-Chr11:3570926 Bda14g00879 Bda-Chr14:6806648 5.52E-40 dispersed
Bda13g00477 Bda-Chr13:5677196 Bda11g00323 Bda-Chr11:3570926 2.62E-26 transposed
Bda14g00038 Bda-Chr14:332112 Bda11g00323 Bda-Chr11:3570926 1.15E-18 transposed
Bda11g00323 Bda-Chr11:3570926 Bda11g00664 Bda-Chr11:6555206 2.70E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g925 . . . . . Bpe14g00853 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0247 . Cone7ag0411 . . . . . . . Bda11g00323 . . Bpe13g00870 Bma02g01195 Bma06g01271 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000800 6 2 2 5 5 2 3 2 2 3 2 2 5 3 2 4 2 6 3 2 2 3 3 2 2 2 2 8 3 2 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00323 Bda_Chr11 FPKM 0.576546 0.55112 3.619167 4.055029 9.78281 10.218966 8.20094 3.387092 3.347638